DRSC/TRiP Functional Genomics Resources

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Protein Alignment qua and Ablim1

DIOPT Version :10

Sequence 1:NP_001246066.1 Gene:qua / 35058 FlyBaseID:FBgn0003187 Length:892 Species:Drosophila melanogaster
Sequence 2:NP_001382083.1 Gene:Ablim1 / 307989 RGDID:1565768 Length:863 Species:Rattus norvegicus


Alignment Length:599 Identity:114/599 - (19%)
Similarity:209/599 - (34%) Gaps:206/599 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   352 PDNTLVVRVLEGHEPVEFKRLFA-----NWLNVWQENTRGHKPVSTK--FGKLDAHSLCERPKMA 409
            |.:|:..:|  .:|.:::|.|.|     ...::.:.:...::|..|.  ..|.|..||.|.|:..
  Rat   413 PGHTIYAKV--DNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYEDKQDRQSLGESPRTL 475

  Fly   410 ADTQLVD---DGRGERVIYRVFGDQVQEVPISKTVVFTTNASFVVKYSVQCATVVPADLASVGIK 471
            :.|...:   ||| :|:|:|.........|:.....:|...|...::..:      .:|.|.|  
  Rat   476 SPTPSAEGFQDGR-DRMIHRSTSQGSINSPVYSRHSYTPTTSRSPQHFHR------PELLSPG-- 531

  Fly   472 TIIYQWNGSEASVESISRADKFAKASFDGLKEPGMFVQLYEFDEPP---HFLQIFEGKLIIRRGQ 533
              :::|:....|..|.:.:|          ..|          .||   |||...:|. ....|:
  Rat   532 --VHRWSPLRTSSFSSTHSD----------TRP----------NPPFRHHFLPHVKGN-EPSSGR 573

  Fly   534 RTEMPYNGNSNALLDTFLLKVYGDASYNAKAVEETHLS----SISSKDCYVIKTNHVWVWCGQSS 594
            .:.:||..:|..|..|:           |:|.:..|:.    :|..|.  .|...|..:.....:
  Rat   574 NSPLPYRPDSRPLTPTY-----------AQAPKHFHVPDQGINIYRKP--PIYKQHAALAAQNKA 625

  Fly   595 TGDAREMAKAVGALMGENSLVLEGKESKEFWQSVAMYFNQTLVINGNGNSCSSSTSSSSGAGSMC 659
            :.|..:.:|...|...:.:.:  .|...:.|..                                
  Rat   626 SEDIIKFSKFPAAQAPDPNEI--PKIETDHWPG-------------------------------- 656

  Fly   660 NGSSNGGNISPTLSNNCYLNTSVPSKPRPPVQLFLVWWQQSSLR---YEEILGFDQQDLSSDCTY 721
                     .|:|:       ::.:.||          ::||.|   .||:|  .::.|..:...
  Rat   657 ---------PPSLA-------AIGTDPR----------RRSSGREEDEEELL--RRRQLQEEQLM 693

  Fly   722 ILDTGSLTYVWLGS-------QAPNQERYTAIAQSY------VQNAPFGRRSATALAVVRQFQEP 773
            .|::|      ||.       :..|:||.:.:|..|      ..:||..:.|:..          
  Rat   694 KLNSG------LGQLILKEEMEKENRERASLLASRYDSPLHSASHAPSSKTSSLP---------- 742

  Fly   774 NVFKGFFESWQNDYGKNFHSYEKMRKDLGNKVTSNCCFASEGSALILNNRQKDF----DGH---- 830
                        .|||:         .|...|:::  ||...|...::...:|:    |||    
  Rat   743 ------------GYGKS---------GLHRPVSTD--FAQYNSYGDVSGGVRDYQTLPDGHMPAM 784

  Fly   831 --------------KKYPLTVLI---QEMDMLPPDINPLKREVHLTHDDFVSVFNMSFYEFDELP 878
                          |.:|..:|:   :..:.:..|::..:.|.||..:.|..:|.||..|||:||
  Rat   785 RMDRGVSMPNMLEPKIFPYEMLMVTNRGRNKILRDVDRTRLERHLAPEVFWEIFGMSIQEFDKLP 849

  Fly   879 KWKKMELKKQFKLF 892
            .|::.::||:.|||
  Rat   850 LWRRNDMKKKAKLF 863

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
quaNP_001246066.1 ADF_gelsolin 26..147 CDD:472830
gelsolin_like 164..254 CDD:200436
gelsolin_S3_like 276..375 CDD:200448 7/27 (26%)
GEL 424..526 CDD:214590 18/104 (17%)
ADF_gelsolin 551..625 CDD:472830 11/77 (14%)
gelsolin_like 689..780 CDD:200436 19/106 (18%)
VHP 857..892 CDD:128458 15/34 (44%)
Ablim1NP_001382083.1 LIM1_abLIM 100..151 CDD:188713
LIM2_abLIM 156..211 CDD:188714
LIM3_abLIM 227..278 CDD:188715
LIM4_abLIM 286..341 CDD:188716
AbLIM_anchor 394..813 CDD:465046 95/547 (17%)
VHP 828..863 CDD:128458 15/34 (44%)
Blue background indicates that the domain is not in the aligned region.

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