DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment qua and Gsn

DIOPT Version :9

Sequence 1:NP_001246066.1 Gene:qua / 35058 FlyBaseID:FBgn0003187 Length:892 Species:Drosophila melanogaster
Sequence 2:XP_006498053.1 Gene:Gsn / 227753 MGIID:95851 Length:802 Species:Mus musculus


Alignment Length:815 Identity:214/815 - (26%)
Similarity:353/815 - (43%) Gaps:133/815 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 IRPNTI----PDLKVDATFRKVAKHAITFAIWKIDEDRLEAVQRSHYGTFYDSCAYIIYAASLSG 72
            ::|:|:    |:      |.|..|.. ...||::::..|..|..:.||.|:...||:|.      
Mouse    67 LQPSTMVVEHPE------FLKAGKEP-GLQIWRVEKFDLVPVPPNLYGDFFTGDAYVIL------ 118

  Fly    73 HYANHETITREQKPNVSLERYIHYWLGKNVSEQNRSNVVHKIQELDSYLGNISSIYRETQNLESA 137
                 :|:   |..|.:|:..:|||||...|:...........:||.||...:..:||.|..||:
Mouse   119 -----KTV---QLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESS 175

  Fly   138 RFLSYFKKGYEF-RFSVRSGALISAPQR---PRLFQLYARKWLRSIEVATIDWSHFNSDYVMVLQ 198
            .|..|||.|.:: :..|.||.....|..   .||||:..|:.:|:.|| .:.|..||:....:|.
Mouse   176 TFSGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLFQVKGRRVVRATEV-PVSWDSFNNGDCFILD 239

  Fly   199 TDNLTYVWIGRSSSGIERRSALDWVQK-----HCSG-SPITIVDDGYE-QAMSQEHKELWNTMLP 256
            ..|..|.|.|..|:..||..|.. |.|     ..|| :.:.:.::|.| :||.|       .:.|
Mouse   240 LGNNIYQWCGSGSNKFERLKATQ-VSKGIRDNERSGRAQVHVSEEGGEPEAMLQ-------VLGP 296

  Fly   257 LKKRMVCQASQLVSEYADYNSNKFRIYK-CNQRGRLHLDQLDVGMPAKDDLSDAHGVYLLDNYGQ 320
              |..:.:.::..::....|....::|| .|..|.:.:..:....|.......:...::|| :|:
Mouse   297 --KPALPEGTEDTAKEDAANRRLAKLYKVSNGAGSMSVSLVADENPFAQGALRSEDCFILD-HGR 358

  Fly   321 --SIWLWVGGQAPQADALSAMGNGRAFVKKKKYPDNTLVVRVLEGHEPVEFKRLFANWLNVWQEN 383
              .|::|.|.||...:..:|:.....|:.|.:||..|.|..:.||.|...||:.|.||.:..|.:
Mouse   359 DGKIFVWKGKQANMEERKAALKTASDFISKMQYPRQTQVSVLPEGGETPLFKQFFKNWRDPDQTD 423

  Fly   384 TRGHKPVSTKFGKL-----DAHSLCERPKMAADTQLVDDGRGERVIYRVFGDQVQEVPISKTVV- 442
            ..|...:|:....:     ||.:|.....|||...:.|||.|::.|:|:.|.  .:||:..... 
Mouse   424 GPGLGYLSSHIANVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRIEGS--NKVPVDPATYG 486

  Fly   443 -FTTNASFVVKYSVQCATVVPADLASVGIKTIIYQWNGSEASVESISRADKFAKASFDGLKEPG- 505
             |....|:::.|:.:..       ...|  .|||.|.|::::.:.:: |.....|..|  :|.| 
Mouse   487 QFYGGDSYIILYNYRHG-------GRQG--QIIYNWQGAQSTQDEVA-ASAILTAQLD--EELGG 539

  Fly   506 --MFVQLYEFDEPPHFLQIFEGK-LIIRRGQRTEMPYNGNSNALLDTFLLKVYGDASYNAKAVEE 567
              :..::.:..||.|.:.:|.|| :||.:|..:.   :|...|.....|.:|...:|...:|||.
Mouse   540 TPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSR---DGGQTAPASIRLFQVRASSSGATRAVEV 601

  Fly   568 THLS-SISSKDCYVIKT---NHVWVWCGQS---STGDAREMAKAVGALMGENSLVLEGKESKEFW 625
            ...| :::|.|.:|:||   .::||..|.|   .|| |:|:.|   .|..::..|.||.|...||
Mouse   602 MPKSGALNSNDAFVLKTPSAAYLWVGAGASEAEKTG-AQELLK---VLRSQHVQVEEGSEPDAFW 662

  Fly   626 QSVAMYFNQTLVINGNGNSCSSSTSSSSGAGSMCNGSSNGGNISPTLSNNCYLNTSVPSKPRPPV 690
            :::                                |.......||.|.:.       .....|| 
Mouse   663 EAL--------------------------------GGKTAYRTSPRLKDK-------KMDAHPP- 687

  Fly   691 QLFLVWWQQSSLRYEEILG-FDQQDLSSDCTYILDTGSLTYVWLGSQAPNQERYTAI--AQSYVQ 752
            :||....:......||:.| ..|:||::|...:|||....:||:|..:..:|:..|:  |:.|::
Mouse   688 RLFACSNRIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIE 752

  Fly   753 NAPFGRRSATALAVVRQFQEPNVFKGFFESWQNDY 787
            ..|..|...|.:.||||..||..|.|:|..|.::|
Mouse   753 TDPANRDRRTPITVVRQGFEPPSFVGWFLGWDDNY 787

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
quaNP_001246066.1 ADF_gelsolin 26..147 CDD:301701 36/120 (30%)
gelsolin_like 164..254 CDD:200436 29/99 (29%)
gelsolin_S3_like 276..375 CDD:200448 27/101 (27%)
GEL 424..526 CDD:214590 23/106 (22%)
ADF_gelsolin 551..625 CDD:301701 26/80 (33%)
gelsolin_like 689..780 CDD:200436 31/93 (33%)
VHP 857..892 CDD:128458
GsnXP_006498053.1 gelsolin_S1_like 79..191 CDD:200446 37/126 (29%)
gelsolin_S2_like 206..295 CDD:200445 29/97 (30%)
gelsolin_S3_like 318..415 CDD:200448 26/97 (27%)
gelsolin_S4_like 459..559 CDD:200449 26/113 (23%)
gelsolin_S5_like 581..669 CDD:200444 29/123 (24%)
gelsolin_S6_like 686..784 CDD:200447 33/98 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0443
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.861654 Normalized mean entropy S5343
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1376537at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100298
Panther 1 1.100 - - O PTHR11977
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.770

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