DRSC/TRiP Functional Genomics Resources

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Protein Alignment qua and ablim3

DIOPT Version :10

Sequence 1:NP_001246066.1 Gene:qua / 35058 FlyBaseID:FBgn0003187 Length:892 Species:Drosophila melanogaster
Sequence 2:XP_004912894.1 Gene:ablim3 / 100494921 XenbaseID:XB-GENE-494311 Length:664 Species:Xenopus tropicalis


Alignment Length:66 Identity:28/66 - (42%)
Similarity:40/66 - (60%) Gaps:3/66 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   830 HKKYP---LTVLIQEMDMLPPDINPLKREVHLTHDDFVSVFNMSFYEFDELPKWKKMELKKQFKL 891
            :|.||   |.|..:..:.||.|::..:.|.||:.::|..||.|:..|||.|..||:.|||||.:|
 Frog   599 YKIYPYELLVVTTRGRNRLPKDVDRTRLERHLSAEEFYQVFGMTISEFDRLALWKRNELKKQARL 663

  Fly   892 F 892
            |
 Frog   664 F 664

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
quaNP_001246066.1 ADF_gelsolin 26..147 CDD:472830
gelsolin_like 164..254 CDD:200436
gelsolin_S3_like 276..375 CDD:200448
GEL 424..526 CDD:214590
ADF_gelsolin 551..625 CDD:472830
gelsolin_like 689..780 CDD:200436
VHP 857..892 CDD:128458 17/34 (50%)
ablim3XP_004912894.1 LIM1_abLIM 22..73 CDD:188713
LIM2_abLIM 78..133 CDD:188714
LIM3_abLIM 150..201 CDD:188715
LIM4_abLIM 209..264 CDD:188716
AbLIM_anchor 273..614 CDD:465046 5/14 (36%)
VHP 629..664 CDD:128458 17/34 (50%)
Blue background indicates that the domain is not in the aligned region.

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