DRSC/TRiP Functional Genomics Resources

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Protein Alignment GCS2beta and PSL4

DIOPT Version :9

Sequence 1:NP_001246063.1 Gene:GCS2beta / 35056 FlyBaseID:FBgn0032643 Length:548 Species:Drosophila melanogaster
Sequence 2:NP_568840.3 Gene:PSL4 / 835736 AraportID:AT5G56360 Length:647 Species:Arabidopsis thaliana


Alignment Length:668 Identity:182/668 - (27%)
Similarity:281/668 - (42%) Gaps:155/668 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SLQLSQVLLIPLLLALVATNVGSASEVPRP--LGVPLAKASLYQPRAGENSWTCLDGSRTIPFSH 65
            |||||       .|.|:|:.:.|:|..|..  ||:.......|:   ..:...|.|||:....:.
plant    13 SLQLS-------FLLLLASAIRSSSSPPNDPFLGISPQDEKYYK---SSSEIKCKDGSKKFTKAQ 67

  Fly    66 INDDYCDCADGSDEPGTAACPQGQFHCVNKGHQPVNIPSSQVQDGICDCCDGSDESE-TVGCPNT 129
            :|||:|||:||:|||||:|||.|:|:|.|.||.||.:.||:|.||||||||||||.: .|.|.||
plant    68 LNDDFCDCSDGTDEPGTSACPTGKFYCRNAGHSPVILFSSRVNDGICDCCDGSDEYDGHVSCQNT 132

  Fly   130 CLELGAAAAVQRRNAAELHKRG-AERRQEMITRGKQMRAEREARRLELDQRRKEQELLRAEKEQL 193
            |.|.|.||....:...|.:.:| ..||||:    :|.:...|....||.:.:.||::|:...:||
plant   133 CWEAGKAARENLKKKIETYNQGLVIRRQEI----EQAKVGLEKDAAELKKLKSEQKILKGLVDQL 193

  Fly   194 KQTAEAL----EAEAIEIFKEQQREVDADTA---------------------------------- 220
            |...|.:    |.|.::..||::.:.:|:.|                                  
plant   194 KDRKEQIEKVEEKERLQKEKEEKEKKEAELAAQQGKGDAEEKTDDSEKVEESSHDEGTPAVSQHD 258

  Fly   221 --------------------QAEREPQQMRQEATLTFVRYD----------TNKDGFVEVTELMV 255
                                .||.||..:..|||.|....:          :::|......|...
plant   259 ETTHHDEIGNYKDYPSDEEPAAEGEPTSILDEATHTNPADEHVVERKEESTSSEDSSSPTDESQN 323

  Fly   256 DMNLDRDRNGVVT-----VEEAKYFLDERERVDLDAFVTLAWPRIKSLQMLAEGLFQPPQPEEVA 315
            |.:.:::.:..|.     |.|.|   :|..:.:|...|...|...||           .:|.|..
plant   324 DGSAEKEESDEVKKVEDFVTEKK---EELSKEELGRLVASRWTGEKS-----------DKPTEAD 374

  Fly   316 QQPEVTTESIQPTPPKLSEEQAELAG----------DDDIEADEEGEEDQYDDEEPDVGVGEASP 370
            ..|:...:......|..:.|..|..|          ||...:|.|.|:|.|::|...........
plant   375 DIPKADDQENHEHTPITAHEADEDDGFVSDGDEDTSDDGKYSDHEPEDDSYEEEYRHDSSSSYKS 439

  Fly   371 DA-------EEATPPNYDPETQRLIQ-----------------QANEARNALEEVERSLREIQQE 411
            ||       |..:.|.:..:.|:.::                 :|:..|...:|....|.:||..
plant   440 DADDDVDFSETTSNPTWLEKIQKTVKNILLAVNLFQTTPVDKSEADRVRKEYDESSSKLNKIQSR 504

  Fly   412 VNEIDDQNNKGYGLTEEWAVHDGQCYNFEDREYVYTLCPFDRASQKSRSGGPETTLGRWDKWSGE 476
            ::.::.:..:.:|..:|:....|:|:..:..:|.|.:|.:..|:|:  .|..:|.||.|||:.  
plant   505 ISSLEKKLKQDFGPEKEFYSFHGRCFESKQGKYTYKVCAYKEATQE--EGYSKTRLGEWDKFE-- 565

  Fly   477 PKQYSQQKYTNGAACWNGPNRSAIINISCALEPKITAVSEPNRCEYYFEFETPAACDSEAFQSES 541
             ..|....||||..|||||:||..:.:.|.|:.::..|.||:||||.....|||.|..:..:...
plant   566 -NSYQFMSYTNGEKCWNGPDRSLKVKLRCGLKNELMDVDEPSRCEYAAILSTPARCLEDKLKELQ 629

  Fly   542 ENL-----------HDEL 548
            :.|           ||||
plant   630 QKLEKLMNQDKPQNHDEL 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCS2betaNP_001246063.1 PRKCSH-like 26..193 CDD:193472 70/170 (41%)
LDLa 85..120 CDD:238060 23/34 (68%)
PRKCSH 398..547 CDD:297835 47/159 (30%)
PSL4NP_568840.3 PRKCSH-like 35..182 CDD:193472 65/153 (42%)
DivIC 143..>203 CDD:299713 17/63 (27%)
PRKCSH 489..627 CDD:297835 45/142 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 128 1.000 Domainoid score I1743
eggNOG 1 0.900 - - E1_KOG2397
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 215 1.000 Inparanoid score I1231
OMA 1 1.010 - - QHG54562
OrthoDB 1 1.010 - - D632472at2759
OrthoFinder 1 1.000 - - FOG0003054
OrthoInspector 1 1.000 - - otm2674
orthoMCL 1 0.900 - - OOG6_102618
Panther 1 1.100 - - O PTHR12630
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3410
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

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