DRSC/TRiP Functional Genomics Resources

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Protein Alignment GCS2beta and Prkcsh

DIOPT Version :9

Sequence 1:NP_001246063.1 Gene:GCS2beta / 35056 FlyBaseID:FBgn0032643 Length:548 Species:Drosophila melanogaster
Sequence 2:NP_001100276.1 Gene:Prkcsh / 300445 RGDID:1309628 Length:525 Species:Rattus norvegicus


Alignment Length:558 Identity:218/558 - (39%)
Similarity:296/558 - (53%) Gaps:55/558 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VLLIPLLLALVATNVGSASEVPRPLGVPLAKASLYQPRAGENSWTCLDGSRTIPFSHINDDYCDC 73
            :||:||..|:         ||.||.||.|:....|..   ...:|||||:.||||..:|||||||
  Rat     5 LLLLPLCWAV---------EVKRPRGVSLSNHHFYDE---SKPFTCLDGTATIPFDQVNDDYCDC 57

  Fly    74 ADGSDEPGTAACPQGQFHCVNKGHQPVNIPSSQVQDGICDCCDGSDE--SETVGCPNTCLELGAA 136
            .||||||||||||.|.|||.|.|::|:.|.||:|.||:||||||:||  |.|| |.|||.|.|..
  Rat    58 KDGSDEPGTAACPNGSFHCTNTGYKPLYILSSRVNDGVCDCCDGTDEYNSGTV-CENTCREKGRK 121

  Fly   137 AAVQRRNAAELHKRGAERRQEMITRGKQMRAEREARRLELDQRRK----EQELLRAEKEQLKQTA 197
            .....:..||:.:.|...::.:|...|..|.|::::.|||...:|    :.|.||..||:    |
  Rat   122 EKESLQQLAEVTREGFRLKKILIEEWKTAREEKQSKLLELQAGKKSLEDQVETLRTAKEE----A 182

  Fly   198 EALEAEAIEIFKEQQR---EVDADTAQAEREPQQMRQEATLTFVRYDTNKDGFVEVTELMVDMNL 259
            |..|.||    |:|.|   |.....|:|.||    ::.|...|...|.|.||.|.:.||.....|
  Rat   183 ERPEKEA----KDQHRKLWEEQQAAAKARRE----QELAASAFQELDDNMDGLVSLAELQTHPEL 239

  Fly   260 DRDRNGVVTVEEAKYFLDERERVDLDAFVTLAWPRIKSLQMLAEGLFQPPQPEEVAQQPEVT--T 322
            |.|.:|.::.|||:..|....:.|..:|....|..|:.       .::...|......||||  .
  Rat   240 DTDGDGGLSEEEAQALLSGDTQTDTTSFYDRVWAAIRD-------KYRSEVPPTDIPVPEVTEPK 297

  Fly   323 ESIQPTPPKLSEEQAELAGDDDIEADEEGEEDQYDDEE------PDVGVGEASPDAEEATPPNYD 381
            |...|..|.:.||:.|    ::.|.:||.||::...|:      |...:...||..:|..|| ||
  Rat   298 EEKLPVLPPMEEEEEE----EEPEEEEEEEEEEVPGEQPKEVPPPQQPLRPPSPAEDEKMPP-YD 357

  Fly   382 PETQRLIQQANEARNALEEVERSLREIQQEVNEIDDQNNKGYGLTEEWAVHDGQCYNFEDREYVY 446
            .|||.:|..|.||||..|||||||:|:::.:..::.:.:..:|.:.|:|....|||.....||||
  Rat   358 EETQAIIDAAQEARNKFEEVERSLKEMEESIRSLEQEISFDFGPSGEFAYLYSQCYELTTNEYVY 422

  Fly   447 TLCPFDRASQKSRSGGPETTLGRWDKWSG-EPKQYSQQKYTNGAACWNGPNRSAIINISCALEPK 510
            .||||...|||.:.||..|:||.|..|:| :..::|..||..|..||.|||||..:.:.|..|..
  Rat   423 RLCPFKLVSQKPKHGGSPTSLGTWGSWAGPDDDKFSAMKYEQGTGCWQGPNRSTTVRLLCGKETV 487

  Fly   511 ITAVSEPNRCEYYFEFETPAACDSEAFQSESENLHDEL 548
            :|:.:||:||||..|..|||||.....:..::..||||
  Rat   488 VTSTTEPSRCEYLMELMTPAACPEPPPEVPTDGDHDEL 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCS2betaNP_001246063.1 PRKCSH-like 26..193 CDD:193472 82/172 (48%)
LDLa 85..120 CDD:238060 21/34 (62%)
PRKCSH 398..547 CDD:297835 60/149 (40%)
PrkcshNP_001100276.1 LDLa 36..63 CDD:197566 19/26 (73%)
ATP-synt_B <113..255 CDD:304375 50/153 (33%)
PRKCSH 377..>505 CDD:297835 52/127 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 154 1.000 Domainoid score I4174
eggNOG 1 0.900 - - E1_KOG2397
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2056
Inparanoid 1 1.050 363 1.000 Inparanoid score I2112
OMA 1 1.010 - - QHG54562
OrthoDB 1 1.010 - - D250167at33208
OrthoFinder 1 1.000 - - FOG0003054
OrthoInspector 1 1.000 - - oto97367
orthoMCL 1 0.900 - - OOG6_102618
Panther 1 1.100 - - LDO PTHR12630
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3410
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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