DRSC/TRiP Functional Genomics Resources

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Protein Alignment GCS2beta and Gnptg

DIOPT Version :10

Sequence 1:NP_609844.1 Gene:GCS2beta / 35056 FlyBaseID:FBgn0032643 Length:548 Species:Drosophila melanogaster
Sequence 2:XP_006245997.1 Gene:Gnptg / 287134 RGDID:1311614 Length:318 Species:Rattus norvegicus


Alignment Length:136 Identity:38/136 - (27%)
Similarity:59/136 - (43%) Gaps:26/136 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   434 GQCYNFEDREYVYTLCPFDRASQKSR-------SGGPETTLGRWDKWSGEPKQYSQQKYTNGAAC 491
            |:|::..:..|.|..|||...:|..:       ||    .||.|.:|......:.....|:|.:|
  Rat    69 GKCFSLVESTYKYEFCPFHNVTQHEQTFRWNAYSG----ILGIWHEWEIVNNTFKGMWMTDGDSC 129

  Fly   492 WNGPNRSAIINISCALEPKITAVSEPNRCEYYFEFETPAACD----------SEAFQSE----SE 542
             :..:|.:.:.::|....::..||||:.|.|...||||..|.          |||.|..    .:
  Rat   130 -HSRSRQSKVELTCGKTNRLAHVSEPSTCVYALTFETPLVCHPHSLLVYPTLSEALQQRWDQVEQ 193

  Fly   543 NLHDEL 548
            :|.|||
  Rat   194 DLADEL 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCS2betaNP_609844.1 PRKCSH-like 26..193 CDD:372423
SMC_prok_B <154..428 CDD:274008
PRKCSH 398..547 CDD:414904 35/133 (26%)
GnptgXP_006245997.1 PRKCSH 69..129 CDD:400321 16/63 (25%)
Blue background indicates that the domain is not in the aligned region.

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