DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sgt and Stip1

DIOPT Version :9

Sequence 1:NP_001246058.1 Gene:Sgt / 35052 FlyBaseID:FBgn0032640 Length:331 Species:Drosophila melanogaster
Sequence 2:NP_477354.1 Gene:Stip1 / 33202 FlyBaseID:FBgn0024352 Length:490 Species:Drosophila melanogaster


Alignment Length:191 Identity:56/191 - (29%)
Similarity:87/191 - (45%) Gaps:23/191 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 NPESLALAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDC 173
            |||.   ||..|.:||...|:..|:.|:..|..||..:|.:|..|.||||.:.:|...:..:.||
  Fly   306 NPEK---AEEEKEQGNLFFKKGDYSTAVKHYTEAIKRNPDDPKLYSNRAACYTKLAAFDLGLKDC 367

  Fly   174 KSALVYNNNYSKAYCRLGVAYSNMGNFEKAEQAYAKAIELEPDN----EVY--------KSNLEA 226
            .:.:..:..:.|.|.|.|.....|....||:.||.||:||:|:|    |.|        ::..|.
  Fly   368 DTCIKLDEKFIKGYIRKGKILQGMQQQSKAQAAYQKALELDPNNAEAIEGYRQCSMNFQRNPQEV 432

  Fly   227 ARNARNQPPQTGRLREDLINMLSQPMVRNLFNNAEIDVEQLLSMLQNPMIMNTIRQQFGGG 287
            .:||.:.|        ::..:|..|.:|.:....:.|...:...||||.|.:.|.:....|
  Fly   433 LKNAMSDP--------EIQQILKDPAMRMILEQMQSDPNAVKEHLQNPAIADKIMKLLESG 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgtNP_001246058.1 SGTA_dimer 9..>48 CDD:293154
TPR_11 116..177 CDD:290150 21/60 (35%)
TPR_2 116..149 CDD:285020 12/32 (38%)
TPR repeat 116..144 CDD:276809 10/27 (37%)
TPR_17 139..170 CDD:290167 11/30 (37%)
TPR repeat 149..179 CDD:276809 9/29 (31%)
TPR_16 156..218 CDD:290168 21/65 (32%)
TPR_1 184..217 CDD:278916 14/32 (44%)
TPR repeat 184..212 CDD:276809 11/27 (41%)
Stip1NP_477354.1 TPR_11 6..69 CDD:290150
TPR repeat 7..32 CDD:276809
TPR repeat 37..67 CDD:276809
TPR_11 40..103 CDD:290150
TPR repeat 72..100 CDD:276809
TPR_11 175..237 CDD:290150
TPR repeat 175..203 CDD:276809
TPR_1 181..208 CDD:278916
TPR_12 205..278 CDD:290160
TPR repeat 208..238 CDD:276809
TPR repeat 250..278 CDD:276809
TPR_1 250..>276 CDD:278916
TPR_11 309..375 CDD:290150 21/68 (31%)
TPR repeat 310..338 CDD:276809 10/27 (37%)
TPR_1 <317..343 CDD:278916 9/25 (36%)
TPR repeat 343..373 CDD:276809 9/29 (31%)
TPR_1 378..411 CDD:278916 14/32 (44%)
TPR repeat 378..406 CDD:276809 11/27 (41%)
STI1 439..478 CDD:128966 10/46 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462418
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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