DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18563 and Tpsg1

DIOPT Version :10

Sequence 1:NP_609841.2 Gene:CG18563 / 35050 FlyBaseID:FBgn0032639 Length:379 Species:Drosophila melanogaster
Sequence 2:NP_001426649.1 Gene:Tpsg1 / 302990 RGDID:631355 Length:320 Species:Rattus norvegicus


Alignment Length:251 Identity:71/251 - (28%)
Similarity:117/251 - (46%) Gaps:32/251 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 GGRCNTTGLYSWVVALFYEEVYLTGGSLISPKVILTAAHNTMNKMNEDRIVVRAGEFVM------ 194
            ||.....|.:.|..:|..::|::.||||:||:.:|||||.....:|.....|..||..:      
  Rat    41 GGHAAQAGAWPWQASLRLQKVHVCGGSLLSPEWVLTAAHCFSGSVNSSDYEVHLGELTITLSPHF 105

  Fly   195 NTTNEPIQYEERVVERIVRHEGFIFQSGINNVALIFVKTPFVLNDRIGVLTLPSRQASFE-GRRC 258
            :|..:.|.|...        .|....||  ::||:.:.||..|:.::..:.||...|.|. |.:|
  Rat   106 STVKQIIMYSSA--------PGPPGSSG--DIALVQLATPVALSSQVQPVCLPEASADFHPGMQC 160

  Fly   259 TVAGWDLVSSHDQSRMRI-IKKLELTVLDRTTCVAQF--RNTTLGRNFDLHPSLICARSEINRDF 320
            .|.||......:..:... :::.:::|:|..||...:  .|.:|     :...::||...  .|.
  Rat   161 WVTGWGYTQEGEPLKPPYNLQEAKVSVVDVETCSQAYSSSNGSL-----IQSDMLCAWGP--GDA 218

  Fly   321 CFGGGGYALFCSLGDENPHVFEQAGIVAWGMGCGL-DLPGIYTNVAMFRSWIYNRI 375
            |....|..|.|.:..    :::|||:|:||.|||. |.||:|..|..:.:||:..|
  Rat   219 CQDDSGGPLVCRVAG----IWQQAGVVSWGEGCGRPDRPGVYARVTAYVNWIHRHI 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18563NP_609841.2 Tryp_SPc 147..371 CDD:214473 65/234 (28%)
Tpsg1NP_001426649.1 None

Return to query results.
Submit another query.