DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dl and relb

DIOPT Version :9

Sequence 1:NP_001286014.1 Gene:dl / 35047 FlyBaseID:FBgn0260632 Length:999 Species:Drosophila melanogaster
Sequence 2:XP_001335593.3 Gene:relb / 795414 ZFINID:ZDB-GENE-030131-9531 Length:590 Species:Danio rerio


Alignment Length:582 Identity:191/582 - (32%)
Similarity:273/582 - (46%) Gaps:115/582 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 NNGAAPGQGPAVDGQQSLNYNGLPAQQ-------------------QQQLAQST-----KNVRKK 46
            :.|.||....:.|...:.:.:|:.|.|                   |:::.|.|     :...:|
Zfish    69 SRGTAPQNSLSFDQVPTAHADGMAAMQSIRGAKGSSQRRGLASVATQRRIPQQTGTEHLEMFLEK 133

  Fly    47 PYVKITEQPAGKALRFRYECEGRSAGSIPGVNSTPENKTYPTIEIVG----YKGRAVVVVSCVTK 107
            |.:.:.|||..:.:||||||||||||||.|.:||..|||.|.|||.|    .| :.:|.||.|||
Zfish   134 PDLVVVEQPKERGMRFRYECEGRSAGSILGASSTDSNKTLPAIEIQGPIDNIK-KVMVTVSLVTK 197

  Fly   108 DTPYRPHPHNLVGKEGCKKGVCTLEINSET-MRAVFSNLGIQCVKKKDIEAALKAREEIRVDPFK 171
            |.|||||||.||||: |..|:|.:.||..: .|..|:|||||||::|:::|:|:.|....:|||.
Zfish   198 DIPYRPHPHCLVGKD-CTDGICVIHINPHSNRRHSFANLGIQCVRRKELDASLQKRRNKNIDPFN 261

  Fly   172 TGFSHRFQPSSIDLNSVRLCFQVFMESEQKGRFTSPLPPVVSEPIFDKKA--MSDLVICRLCSCS 234
            ||.|...:  .:|:|.||||||..:|.:...|.|  |.||||.||:||||  .::|.|.||....
Zfish   262 TGHSKSIE--DMDMNVVRLCFQCELEQKNGDRIT--LNPVVSNPIYDKKATTTAELKINRLNVIR 322

  Fly   235 ATVFGNTQIILLCEKVAKEDISVRFFEEKNGQSVWEAFGDFQHTDVHKQTAITFKTPRYHTLDIT 299
            ....|.|:|.:||:||.|:||.:.|..|.     |||..:|..||||:|.||.||:|.:...||.
Zfish   323 GPCTGKTEIYMLCDKVQKDDIEIIFSIED-----WEAKAEFAQTDVHRQIAIVFKSPPFREQDIL 382

  Fly   300 EPAKVFIQLRRPSDGVTSEALPFEYVPMDSGKHTFWNLHRHLKRKPDEDLFQQILRLDAKREV-- 362
            |..:|.:.|||.||.:.||.:.|.|||.::..   :.::|..|.|.|.. |.:...:...:::  
Zfish   383 EETEVNVCLRRMSDRMDSEPVKFTYVPDNADP---YGVNRKRKMKTDVK-FSESCNIPQSQDLLM 443

  Fly   363 -QPPTIEVID--LDTPKIDVQREIPSEMEFNHEESQQSEPALE--QEQSVQQEQYTQEQSLQQEQ 422
             .|.|.:..|  ..||:.:|                .|.|...  |:..:.....|.|:.|..|.
Zfish   444 NDPGTSQQFDPFYPTPECNV----------------SSAPIAVPLQDGGIHMPSLTVEEMLYNED 492

  Fly   423 YTQEQSLQQEQYLQQLEQQQSFQLEEPMQQDQELPAQQSFDQAIDHLPDHTSDHIPED------- 480
            :.||...                    :..|||  |..||  .:..|..|.||.:...       
Zfish   493 FKQEDGC--------------------ISMDQE--ALSSF--LLQCLGPHGSDQVYNQLSSELNL 533

  Fly   481 -MEAADAHAEAEAHRLRSEQEKEIDTIIDEKVRELEQLDLGQQLEPRPLTANDKITEWMKSS 541
             ::.||.:.......:.|..:.....::.|.             :|.|... :.|.|:|.||
Zfish   534 VLDGADINVNQTMLNMASINDAHFSQMVSEN-------------QPYPADL-ENIEEFMFSS 581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dlNP_001286014.1 RHD-n_Dorsal_Dif 47..220 CDD:143647 91/177 (51%)
IPT_NFkappaB 225..326 CDD:238582 43/100 (43%)
relbXP_001335593.3 RHD-n 134..306 CDD:298664 91/177 (51%)
RHD_dimer 314..410 CDD:318421 43/100 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593310
Domainoid 1 1.000 168 1.000 Domainoid score I3790
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D391433at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6520
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24169
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.950

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