DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dl and nfkb1

DIOPT Version :9

Sequence 1:NP_001286014.1 Gene:dl / 35047 FlyBaseID:FBgn0260632 Length:999 Species:Drosophila melanogaster
Sequence 2:XP_021336944.1 Gene:nfkb1 / 565756 ZFINID:ZDB-GENE-121204-3 Length:539 Species:Danio rerio


Alignment Length:342 Identity:131/342 - (38%)
Similarity:183/342 - (53%) Gaps:51/342 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 PYVKITEQPAGKALRFRYECEGRSAGSIPGVNSTPENKTYPTIEIVGYKGRAVVVVSCVTKDTPY 111
            |.::|||||..:..||||.|||.|.|.:||.:|....|:||.::|..|:|.|.|||..||.....
Zfish    52 PCLQITEQPKQRGFRFRYGCEGPSHGGLPGASSEKNRKSYPQVQICNYQGPARVVVQLVTNSQHP 116

  Fly   112 RPHPHNLVGKEGCKKGVCTLEINSETMRAVFSNLGIQCVKKKDIEAALKAREEIRVDPFKTGFSH 176
            ..|.|:||||: |.||:|..::..:.....|.||||..|.||::.   |..||..::.::.|:::
Zfish   117 HLHAHSLVGKQ-CDKGICISDMQPKDSSISFPNLGILHVTKKNVS---KVLEERMMEAYRMGYNY 177

  Fly   177 RF---------------------------------QPSSIDLNSVRLCFQVFMESEQKGRFTSPL 208
            ..                                 |...:||:.|||.|..|: .:..|.|:..|
Zfish   178 GIFIHPEIDALQGEVRMPRELNEAERSLISSAASQQAKEMDLSVVRLMFTAFL-PDSDGGFSRRL 241

  Fly   209 PPVVSEPIFDKKA--MSDLVICRLCSCSATVFGNTQIILLCEKVAKEDISVRFFEEKNGQSVWEA 271
            .||:||||:|.||  .|:|.|.|:...:..|.|..::.|||:||.|:||.|||:|:.:  |.|||
Zfish   242 EPVISEPIYDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEDDD--SGWEA 304

  Fly   272 FGDFQHTDVHKQTAITFKTPRYHTLDITEPAKVFIQLRRPSDGVTSEALPFEYVPMDSGKHTFWN 336
            :|||..||||:|.||.||||:|..|::.:|..||:||:|.||..|||..||.|.|....|     
Zfish   305 YGDFSPTDVHRQFAIVFKTPKYRDLNLQKPISVFVQLKRKSDNETSEPKPFTYHPQIIDK----- 364

  Fly   337 LHRHLKRKPDEDL--FQ 351
              ..::||..:.|  ||
Zfish   365 --EEVQRKRQKTLPNFQ 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dlNP_001286014.1 RHD-n_Dorsal_Dif 47..220 CDD:143647 70/205 (34%)
IPT_NFkappaB 225..326 CDD:238582 51/100 (51%)
nfkb1XP_021336944.1 RHD-n 52..253 CDD:298664 70/205 (34%)
IPT_NFkappaB 260..359 CDD:238582 51/100 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593306
Domainoid 1 1.000 106 1.000 Domainoid score I6490
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D391433at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.850

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