DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dl and rela

DIOPT Version :9

Sequence 1:NP_001286014.1 Gene:dl / 35047 FlyBaseID:FBgn0260632 Length:999 Species:Drosophila melanogaster
Sequence 2:XP_012816239.2 Gene:rela / 407869 XenbaseID:XB-GENE-946506 Length:534 Species:Xenopus tropicalis


Alignment Length:557 Identity:182/557 - (32%)
Similarity:262/557 - (47%) Gaps:116/557 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 LAQSTKNVRKKPYVKITEQPAGKALRFRYECEGRSAGSIPGVNSTPENKTYPTIEIVGYKGRAVV 100
            :..||......|:|:|.|||..:.:||||:|||||||||||..||...||:|||:|..|:|.|.:
 Frog    12 MVSSTVMPSSHPHVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINHYQGSARI 76

  Fly   101 VVSCVTKDTPYRPHPHNLVGKEGCKKGVCTLEINSETMRAVFSNLGIQCVKKKDIEAALKAREEI 165
            .:|.||||:|::||||.||||: ||.|....|::.:.....|.|||||||||:::|.|:..|...
 Frog    77 RISLVTKDSPHKPHPHELVGKD-CKDGYYEAELSPDRSIHSFQNLGIQCVKKREVEDAIAHRIRT 140

  Fly   166 RVDPFKTGFSHRFQP----SSIDLNSVRLCFQVFMESEQKGRFTSPLPPVVSEPIFDKKA--MSD 224
            ..:||..      .|    |..|||:|.||||||:.....|:.. |||.|||:||:|.:|  .::
 Frog   141 NNNPFNV------PPEELKSDYDLNTVCLCFQVFIPDRAAGQVV-PLPFVVSQPIYDNRAPNTAE 198

  Fly   225 LVICRLCSCSATVFGNTQIILLCEKVAKEDISVRFFEEKNGQSVWEAFGDFQHTDVHKQTAITFK 289
            |.|||:...|.:..|..:|.|||:||.||||.|.|.     ...|||.|.|...|||:|.||.|:
 Frog   199 LKICRVNRNSGSCMGGDEIFLLCDKVQKEDIEVLFV-----LGNWEARGIFSQADVHRQVAIVFR 258

  Fly   290 TPRYHTLDITEPAKVFIQLRRPSDGVTSEALPFEYVPMDSGKHTFWNLHRHLKRKPDEDLFQQIL 354
            ||.:|...|.:..||.:|||||||...||.:.|:|:|.:...|     |...|||...|.|:..:
 Frog   259 TPAFHDTKIRQSVKVQMQLRRPSDKEVSEPMEFQYLPDEVDPH-----HIDEKRKRTLDSFKHYV 318

  Fly   355 R--------------------LDAKRE-----VQP------PTIEVIDLDTP--KID-------- 378
            :                    :..|.|     ::|      |.:..:....|  |:|        
 Frog   319 KNPFAGGETRTPRRIAVPNRIVPTKSEPITASIRPSPSVPNPMVPSLSFSMPVLKVDSVTSASTR 383

  Fly   379 ---VQREIPSEMEFNHEESQQSEPALEQEQSVQQEQYTQEQSLQ---------QEQYTQEQSLQQ 431
               |.....|.:.|:.:...||:|. ..|..:....::.:.:|.         :.:.|...|:..
 Frog   384 LSTVNISDFSNLGFSSQPPPQSDPD-RIESFLNYPSFSGDANLDLVEMLPNDTESRCTSLSSIDN 447

  Fly   432 EQYLQQLEQQQ-----SFQLEEPMQQDQELPAQQSFDQAIDHLPDHTSDHIPEDMEAADAHAEAE 491
            ..:.|.|.:.|     |..|:||......|                        |...|:.|...
 Frog   448 SDFSQLLSESQTSGTLSAGLQEPGTSQGTL------------------------MSYPDSIARLM 488

  Fly   492 AHR-LRSEQEKEIDTIIDEKVRELEQ--------LDL 519
            ::| :..:.|:.||:::...|.:::|        |||
 Frog   489 SNRPIEDDGEERIDSVLMNGVFDMQQGVESITSLLDL 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dlNP_001286014.1 RHD-n_Dorsal_Dif 47..220 CDD:143647 87/176 (49%)
IPT_NFkappaB 225..326 CDD:238582 47/100 (47%)
relaXP_012816239.2 RHD-n_RelA 23..192 CDD:143645 87/176 (49%)
RHD_dimer 200..296 CDD:406564 46/100 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 159 1.000 Domainoid score I4039
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D391433at33208
OrthoFinder 1 1.000 - - FOG0002243
OrthoInspector 1 1.000 - - mtm9475
Panther 1 1.100 - - LDO PTHR24169
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2257
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.020

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