DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dl and nfkb1

DIOPT Version :9

Sequence 1:NP_001286014.1 Gene:dl / 35047 FlyBaseID:FBgn0260632 Length:999 Species:Drosophila melanogaster
Sequence 2:XP_002934805.3 Gene:nfkb1 / 100486083 XenbaseID:XB-GENE-985746 Length:955 Species:Xenopus tropicalis


Alignment Length:998 Identity:243/998 - (24%)
Similarity:355/998 - (35%) Gaps:333/998 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 PAQQQQQLAQSTKNVR--KKPYVKITEQPAGKALRFRYECEGRSAGSIPGVNSTPENKTYPTIEI 91
            |..|:.....|..|:|  :.||::|||||..:..||||.|||.|.|.:||.:|....|:||.|:|
 Frog    21 PLFQEPIYMTSEPNLRSAEGPYIEITEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQIKI 85

  Fly    92 VGYKGRAVVVVSCVTKDTPYRPHPHNLVGKEGCKKGVCTLEINSETMRAVFSNLGIQCVKKKDIE 156
            ..|.|:..::|..:|.....|.|.|:|||| .|:.|:|:|.:..:.....|:||||..|.||.:.
 Frog    86 HNYVGQVKIIVQLITNSKDIRLHAHSLVGK-NCEDGICSLTVGPKDTIVGFANLGILHVTKKKVI 149

  Fly   157 AALKAREEIRVDPFKTGFSHRF------------------------------QPSSIDLNSVRLC 191
            ..|:||   ..|.||.|.:...                              |...|||:.|||.
 Frog   150 EILEAR---MTDAFKKGHNAALLVHPELNYTYSEDRQLNVREKEIIRQAAMQQAKDIDLSVVRLM 211

  Fly   192 FQVFMESEQKGRFTSPLPPVVSEPIFDKKA--MSDLVICRLCSCSATVFGNTQIILLCEKVAKED 254
            |..|: .:.:||||..|.||||.||||.||  .|:|.|.|:...:..|.|..::.|||:||.|:|
 Frog   212 FTAFL-PDSEGRFTRSLEPVVSVPIFDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDD 275

  Fly   255 ISVRFFEEKNGQSVWEAFGDFQHTDVHKQTAITFKTPRYHTLDITEPAKVFIQLRRPSDGVTSEA 319
            |.|||:||......||.||||..||||:|.||.||||:|..::||:.|.||:||||.||..|||.
 Frog   276 IQVRFYEEDENGGFWEGFGDFSPTDVHRQFAIVFKTPKYKDVNITKAASVFVQLRRKSDYETSEP 340

  Fly   320 LPFEYVPMDSGKHTFWNLHRHLKRKPDEDLFQQILRLDAKREVQPPTIEVIDLDTPKIDVQREIP 384
            .||.|.|                            .:..|.|||...             |:.:|
 Frog   341 KPFLYYP----------------------------EIKDKEEVQRKR-------------QKLMP 364

  Fly   385 -------------------------------------SEMEFN-------HEESQQSEPALEQEQ 405
                                                 |...:|       |.....|.|.::.| 
 Frog   365 NFSDGFGGSGAGSGGGGGGLYGGGGAGGSGAGGSYGFSSFSYNNYGGLNFHGGPMNSSPCMKHE- 428

  Fly   406 SVQQEQYTQEQSLQQEQYTQEQSLQQEQYLQQLEQQQSFQLEEPMQQDQELPAQQS--------- 461
                         .|.|....|...:...:|....:......:.:|:::|.||::.         
 Frog   429 -------------SQPQCEANQKHVETMNIQDAPNEVVCLCFDTVQENEEAPAREEREFCKLHDC 480

  Fly   462 -----------------FDQAID-----------HL---PDHTSDHIPEDMEAADAHAEAEAHR- 494
                             ||.|:.           ||   .|...|:|   :..:..|..:...| 
 Frog   481 NFPRNALQLTKRHAASLFDYAVTGDVRMLLAVQRHLASIQDENGDNI---LHLSIIHQHSALVRI 542

  Fly   495 -LRSEQEKEIDTIIDEKVRELEQLDLG-QQLEPRPLTAND------------------------- 532
             |...|....|.||:.: .:|.|..|. ..:..:|.|..|                         
 Frog   543 FLDITQGPVCDDIINVR-NDLYQTPLHLAVITQQPDTVQDIIKAGGDPLCLDRDGNSVLHLACKE 606

  Fly   533 ----KITEWMKSSEIEQQVHEPSP----------------------TAEADVL-------DSALE 564
                .::..:|..:..:.::.|:.                      :|.|||.       .|||.
 Frog   607 GDASTLSILLKHKKTLEIINLPNNDGLNPIHVAVLSNCVLCLRLLISARADVNAQEQKSGKSALH 671

  Fly   565 ISKADKTLD----ELLETVAELDEIYTD------FKVQRDTYKNTIQNELAG----LQGRAPL-- 613
            ::.....:.    .|||..|.:|....|      ..|.|.:.|.|...:.||    ::...||  
 Frog   672 LAVEQDNISLAGCLLLEGDACVDNTTYDGNTPLHIAVGRGSTKLTALLKAAGADSFVENFEPLLR 736

  Fly   614 ----QVEDSFDDAAT--YTSLQIAFKNPVLIPMDDIMPPTPPMSQCAPEDAHQHYDPVEVNSQAR 672
                |.||..|:...  ...|.||..:.||    :|:...|..|:.||||:....|...::.:.:
 Frog   737 FEDTQDEDDVDEGIVPGTKPLDIATSDEVL----EILNGKPYKSEVAPEDSLPQGDMKNLSGEVK 797

  Fly   673 KPETPMRPVPPVPPAILTIQYPPEEDKLPPLPPKRIRKQDSNAENRSIEANTVQTKPSTGESPLN 737
            :             .:.|:                       .|:|.::.|.|......|...||
 Frog   798 Q-------------RLYTL-----------------------LESRDLDKNWVTLAQKLGLGMLN 826

  Fly   738 K--RLPPAPKN---PNFNTLPRQKKPGFFSKLFSRRK--SKPDLAQGQENSSILDSKANSREPS- 794
            .  ||.|.|..   .||     :...|..::|....|  ...:..:..|.|..:...:.:..|| 
 Frog   827 NAFRLSPHPSKTLLDNF-----EVSGGTMTELLDALKLMHYTEAVEAIEQSQAILKLSGTSTPSS 886

  Fly   795 ---------------IGHFNMQD 802
                           :|:..:||
 Frog   887 EALLPAQRRDSPMFDVGYLKLQD 909

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dlNP_001286014.1 RHD-n_Dorsal_Dif 47..220 CDD:143647 76/202 (38%)
IPT_NFkappaB 225..326 CDD:238582 53/100 (53%)
nfkb1XP_002934805.3 RHD-n 41..239 CDD:415490 76/202 (38%)
IPT_NFkappaB 246..347 CDD:238582 53/100 (53%)
Ank_2 509..593 CDD:403870 18/87 (21%)
ANK repeat 523..560 CDD:293786 9/40 (23%)
ANK repeat 564..593 CDD:293786 5/28 (18%)
Ank_2 567..661 CDD:403870 10/93 (11%)
ANK repeat 595..629 CDD:293786 1/33 (3%)
ANK repeat 631..662 CDD:293786 4/30 (13%)
Ank_2 636..725 CDD:403870 19/88 (22%)
ANK repeat 665..697 CDD:293786 8/31 (26%)
ANK repeat 699..730 CDD:293786 7/30 (23%)
Death_NFkB1_p105 796..871 CDD:260063 17/115 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 110 1.000 Domainoid score I6215
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D391433at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24169
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.020

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