DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dif and relb

DIOPT Version :9

Sequence 1:NP_001162998.1 Gene:Dif / 35045 FlyBaseID:FBgn0011274 Length:987 Species:Drosophila melanogaster
Sequence 2:XP_001335593.3 Gene:relb / 795414 ZFINID:ZDB-GENE-030131-9531 Length:590 Species:Danio rerio


Alignment Length:617 Identity:183/617 - (29%)
Similarity:269/617 - (43%) Gaps:134/617 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ASMELNGGATGGGSVAGAVGGGGAAHHILSQSTSLPVMPSHIPLHLQNQNMNQNLPEPSARSGPH 79
            |:|:...||.|.....|.  ...|....:.|.|.    ..|:.:.|:.               |.
Zfish    92 AAMQSIRGAKGSSQRRGL--ASVATQRRIPQQTG----TEHLEMFLEK---------------PD 135

  Fly    80 LRIVEEPTSNIIRFRYKCEGRTAGSIPGMNSSSETGKTFPTIEVCNYDGP------VIIVVSCVT 138
            |.:||:|....:||||:||||:||||.|. ||:::.||.|.||:   .||      |::.||.||
Zfish   136 LVVVEQPKERGMRFRYECEGRSAGSILGA-SSTDSNKTLPAIEI---QGPIDNIKKVMVTVSLVT 196

  Fly   139 SDEPFRQHPHWLVSKEEADACKSGIYQKKL-PPEERRLVLQKVGIQCAKKLEMRDSLVERERRNI 202
            .|.|:|.|||.||.|:    |..||....: |...||.....:||||.::.|:..||.:|..:||
Zfish   197 KDIPYRPHPHCLVGKD----CTDGICVIHINPHSNRRHSFANLGIQCVRRKELDASLQKRRNKNI 257

  Fly   203 DPFNAKFDHKDQIDKINRYELRLCYQAFITVGN-SKVPLDPIVSSPIYGK----SSELTITRLCS 262
            ||||.  .|...|:.::...:|||:|..:...| .::.|:|:||:|||.|    ::||.|.||..
Zfish   258 DPFNT--GHSKSIEDMDMNVVRLCFQCELEQKNGDRITLNPVVSNPIYDKKATTTAELKINRLNV 320

  Fly   263 CAATANGGDEIIMLCEKIAKDDIEVRFYETDKDGRETWFANAEFQPTDVFKQMAIAFKTPRYRNT 327
            ......|..||.|||:|:.|||||:.|      ..|.|.|.|||..|||.:|:||.||:|.:|..
Zfish   321 IRGPCTGKTEIYMLCDKVQKDDIEIIF------SIEDWEAKAEFAQTDVHRQIAIVFKSPPFREQ 379

  Fly   328 EITQSVNVELKLVRPSDGATSAPLPFEYYPNPGTVTFARLQRKLKRRQELDVFQQILSLDSETTA 392
            :|.:...|.:.|.|.||...|.|:.|.|.|:.........:||:|                  |.
Zfish   380 DILEETEVNVCLRRMSDRMDSEPVKFTYVPDNADPYGVNRKRKMK------------------TD 426

  Fly   393 TKYSCPPMDLEEDNNTVSSDDQQSSGTLNEFEIAVKKMQMRQRGESHEMDGGTVTEYTDNDNEPD 457
            .|:|       |..|...|.|                :.|...|.|.:.|....|          
Zfish   427 VKFS-------ESCNIPQSQD----------------LLMNDPGTSQQFDPFYPT---------- 458

  Fly   458 MEIELEVPQLLPQLADDCTQTSTPMEEILQHPQLQSRPLSNVETITEWMKSSEFERTDSLTVENG 522
                           .:|..:|.|:...||...:....|    |:.|.:.:.:|::.|...  :.
Zfish   459 ---------------PECNVSSAPIAVPLQDGGIHMPSL----TVEEMLYNEDFKQEDGCI--SM 502

  Fly   523 DTQSLSNSTAQTAFTNVSSLTANTTITNQLDEEAHGLLANGSRRDTLENPAVKELPE-NEKE-PE 585
            |.::||:...|....:.|.     .:.|||..|.: |:.:|:  |...|..:..:.. |:.. .:
Zfish   503 DQEALSSFLLQCLGPHGSD-----QVYNQLSSELN-LVLDGA--DINVNQTMLNMASINDAHFSQ 559

  Fly   586 MVSASAQASMDLDENFDETATYTSLQIAFNNP 617
            |||.:.....|| ||.:| ..::|::.. |||
Zfish   560 MVSENQPYPADL-ENIEE-FMFSSVKTE-NNP 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DifNP_001162998.1 RHD-n_Dorsal_Dif 78..252 CDD:143647 76/185 (41%)
RHD_dimer 256..358 CDD:292797 42/101 (42%)
relbXP_001335593.3 RHD-n 134..306 CDD:298664 75/181 (41%)
RHD_dimer 314..410 CDD:318421 42/101 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593309
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D391433at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6520
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24169
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.950

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