DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dif and relb

DIOPT Version :9

Sequence 1:NP_001162998.1 Gene:Dif / 35045 FlyBaseID:FBgn0011274 Length:987 Species:Drosophila melanogaster
Sequence 2:XP_002932654.2 Gene:relb / 100486410 XenbaseID:XB-GENE-964072 Length:501 Species:Xenopus tropicalis


Alignment Length:507 Identity:160/507 - (31%)
Similarity:229/507 - (45%) Gaps:105/507 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 GGAAHHILSQ-------------STSLPVMPS---------HIPLH-LQNQNMNQNLPE------ 71
            |.|....|||             ::.:|||||         ..|.. |....::..:|.      
 Frog     5 GRAETSFLSQQLGTTIEDVMDLINSDMPVMPSTSSTLFACEETPSDMLSTVTVSHCVPREQCPST 69

  Fly    72 --PSARSGPH--LRIVEEPTSNIIRFRYKCEGRTAGSIPGMNSSSETGKTFPTIEVCNYDG--PV 130
              .|.|..|:  |:|.|:|....:||||:||||:||||.| ..|:|..||.|.|||.|.||  .:
 Frog    70 SWASQRESPYPELKITEQPKQRGMRFRYQCEGRSAGSILG-TQSTEHNKTLPEIEVINCDGLEKI 133

  Fly   131 IIVVSCVTSDEPFRQHPHWLVSKEEADACKSGIYQKKLPPEE--RRLVLQKVGIQCAKKLEMRDS 193
            .:.|..|..|.|.|.|||.||.|:    |..||.|..|.|:.  .:.....:||||.:|.|:..|
 Frog   134 CVTVCLVWKDPPHRVHPHGLVGKD----CHDGICQVTLHPQNDVAKHSFSNLGIQCVRKKEIDSS 194

  Fly   194 LVERERRNIDPFNA-KFDHKDQIDKINRYELRLCYQAFITVGNSKVPLDPIVSSPIYGK----SS 253
            :..|.:.||||:.| |:...:::| :|  .:|||:||..|....:..:.|::|.|||.|    :|
 Frog   195 VNHRLKLNIDPYKAGKWRLHEEVD-LN--VVRLCFQASCTGPGFQYEIAPVLSEPIYDKKSTNTS 256

  Fly   254 ELTITRLCSCAATANGGDEIIMLCEKIAKDDIEVRFYETDKDGRETWFANAEFQPTDVFKQMAIA 318
            ||.|:|:...:....||:|:.:||:|:.|:||.|.|.|.|      |.|.|:|...||.:|:||.
 Frog   257 ELKISRMNRESGRCEGGEEVYILCDKVQKEDILVIFAEDD------WEARADFSQADVHRQIAIV 315

  Fly   319 FKTPRYRNTEITQSVNVELKLVRPSDGATSAPLPFEYYP---NPGTVTFARLQR----------- 369
            .|||.|.:..||:...|.:.|.|.:||..|..:||.|.|   :|..|...|..|           
 Frog   316 LKTPPYHDLHITEPAYVSVFLQRITDGIRSEGIPFVYMPRVKDPNCVHSKRTYRDSLQLSDIGDP 380

  Fly   370 -----KLKRRQELDVFQQILS--------LDSETTATKY-SCPPMDLEEDN-NTVSSDDQQSSGT 419
                 |:|:|:....:...|:        |||......| :.|.||.:|.. |.:|.|.....|.
 Frog   381 DPHGIKMKKRKVKPCYADHLNSSYPDVPLLDSLNCNDGYHTLPLMDNDEGAVNFLSEDPADFLGL 445

  Fly   420 L--------------NEFEIAVKKMQMRQRGESHEMDGGTVTEYTDNDNEPD 457
            |              |.|      :..:..|.:..:.|.::....:..|.||
 Frog   446 LAHESYPNNFLDMYSNPF------LTEQVNGLTAHLVGSSLALTDEEQNLPD 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DifNP_001162998.1 RHD-n_Dorsal_Dif 78..252 CDD:143647 74/184 (40%)
RHD_dimer 256..358 CDD:292797 40/104 (38%)
relbXP_002932654.2 RHD-n_RelB 80..251 CDD:143646 72/178 (40%)
IPT_NFkappaB 258..354 CDD:238582 40/101 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 214 1.000 Inparanoid score I3530
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D391433at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9475
Panther 1 1.100 - - O PTHR24169
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4542
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.100

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