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Protein Alignment Rpb11 and polr1d
DIOPT Version :9
Sequence 1: | NP_609836.1 |
Gene: | Rpb11 / 35043 |
FlyBaseID: | FBgn0032634 |
Length: | 117 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001003888.1 |
Gene: | polr1d / 445412 |
ZFINID: | ZDB-GENE-040930-4 |
Length: | 112 |
Species: | Danio rerio |
Alignment Length: | 106 |
Identity: | 38/106 - (35%) |
Similarity: | 56/106 - (52%) |
Gaps: | 7/106 - (6%) |
- Green bases have known domain annotations that are detailed below.
Fly 15 GEKKIIKELDTKVTN--AAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQT 77
|:|..::.:.|...: ...|.:|:|||||||.:|..::|..:|.|.||.:.||.|.|...||||
Zfish 5 GQKHALEMVRTDGADEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQT 69
Fly 78 TADYSPQEAF---MNAITDLLAE-LSLFEERFKDAIKEKKE 114
.......|.. :|.:||:... |..||.|.|: .||::|
Zfish 70 RDGVPASEPLRNGLNNLTDVCKHVLQTFEARMKE-FKEQEE 109
|
Known Domains:
Indicated by green bases in alignment.
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1761 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1398114at2759 |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
ZFIN |
0 | 0.000 |
Not matched by this tool. |
|
4 | 3.820 |
|
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