DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment Rpb11 and Polr2j

DIOPT Version :9

Sequence 1:	NP_609836.1	Gene:	Rpb11 / 35043	FlyBaseID:	FBgn0032634	Length:	117	Species:	Drosophila melanogaster
Sequence 2:	NP_001099391.1	Gene:	Polr2j / 288588	RGDID:	1310198	Length:	117	Species:	Rattus norvegicus

Alignment Length:	115	Identity:	90/115 - (78%)
Similarity:	102/115 - (88%)	Gaps:	0/115 - (0%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPH 65
            |||||.||||||:||||||....||||.||.:||||||||||||:|::||||||.||||||||||
  Rat     1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPH 65

  Fly    66 PLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFKDAIKEKKEG 115
            |||||.:||:|||.||||||||.||||||::||||.||||:.|||:|:||
  Rat    66 PLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEG 115

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Rpb11	NP_609836.1	RNAP_II_RPB11	14..105	CDD:132902	71/90 (79%)
Polr2j	NP_001099391.1	RNAP_II_RPB11	14..105	CDD:132902	71/90 (79%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166353787
Domainoid	1	1.000	129	1.000	Domainoid score	I5162
eggNOG	1	0.900	-	-		E1_COG1761
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H4542
Inparanoid	1	1.050	189	1.000	Inparanoid score	I3809
OMA	1	1.010	-	-		QHG54303
OrthoDB	1	1.010	-	-		D1398114at2759
OrthoFinder	1	1.000	-	-		FOG0002958
OrthoInspector	1	1.000	-	-		oto95742
orthoMCL	1	0.900	-	-		OOG6_101401
Panther	1	1.100	-	-	LDO	PTHR13946
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X1954
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
	16	15.770