DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr2J and rpb11

DIOPT Version :10

Sequence 1:NP_609836.1 Gene:Polr2J / 35043 FlyBaseID:FBgn0032634 Length:117 Species:Drosophila melanogaster
Sequence 2:NP_593333.1 Gene:rpb11 / 2543112 PomBaseID:SPAC3A12.07 Length:123 Species:Schizosaccharomyces pombe


Alignment Length:105 Identity:52/105 - (49%)
Similarity:67/105 - (63%) Gaps:1/105 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPH 65
            ||.|..:|...|. |..|:..|||:|..|||:.|:.||||||.||:.||||.|..||||||||||
pombe     1 MNQPERYELIELM-GLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPH 64

  Fly    66 PLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERF 105
            ||.|.|::|:||..|.||::..::|...|:..|...:..|
pombe    65 PLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIKVNF 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr2JNP_609836.1 RNAP_II_RPB11 14..105 CDD:132902 46/90 (51%)
rpb11NP_593333.1 RNAP_II_RPB11 14..104 CDD:132902 46/89 (52%)

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