Protein Alignment Rpb11 and Polr1d

DIOPT Version :9

• Sequence 1: NP_609836.1
• Gene: Rpb11 / 35043
• FlyBaseID: FBgn0032634
• Length: 117
• Species: Drosophila melanogaster
• Sequence 2: NP_033113.1
• Gene: Polr1d / 20018
• MGIID: 108403
• Length: 133
• Species: Mus musculus
• Alignment Length: 107
• Identity: 38/107 - (35%)
• Similarity: 54/107 - (50%)
• Gaps: 11/107 - (10%)

  Fly    14 EGEKKIIKELDTKVTNAA-------IFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKF 71
            |||:|...|:    ..||       .|.:::|||||||.:|..::|:|.|.|.||...||.|.|.
Mouse    20 EGERKTALEM----VQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKI 80

  Fly    72 VIRIQTTADYSPQEAFMNAITDLLAELSLFEERFKDAIKEKK 113
            .:||||.......|.|...:.:||........:|:.:||:.|
Mouse    81 NLRIQTRGALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYK 122

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpb11	NP_609836.1	RNAP_II_RPB11	14..105	CDD:132902	34/97 (35%)
Polr1d	NP_033113.1	RNAP_I_III_AC19	30..114	CDD:132907	29/83 (35%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG1761
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1398114at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.820