DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CLIP-190 and clip1a

DIOPT Version :9

Sequence 1:NP_001368962.1 Gene:CLIP-190 / 35042 FlyBaseID:FBgn0020503 Length:1795 Species:Drosophila melanogaster
Sequence 2:XP_009300267.1 Gene:clip1a / 797680 ZFINID:ZDB-GENE-060526-282 Length:1569 Species:Danio rerio


Alignment Length:1870 Identity:497/1870 - (26%)
Similarity:847/1870 - (45%) Gaps:431/1870 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 QPSKMKAPSSFGSTGSVSKIGRPCCNHTTPKSGPPPREATSMSRESDDNLSSINSAYTDNSSAVL 116
            :||.:|||         ||||||.  :|.|....|...|:             .:|.:|.|||..
Zfish     5 KPSGLKAP---------SKIGRPA--NTGPTKTSPSAGAS-------------KAAQSDKSSAEA 45

  Fly   117 TANTEQFIIGQRVWLGGTRPGQIAFIGDTHFAAGEWAGVVLDEPNGKNDGCVSGKRYFQCEPKRG 181
            ....|||.:|.|||:.|.:||.:.|:|:|.||.|:|||:|||||.|||||.|||.||||||..||
Zfish    46 PDAGEQFKVGDRVWVNGNKPGVVQFLGETQFAPGQWAGIVLDEPIGKNDGSVSGVRYFQCEALRG 110

  Fly   182 IFSRLTRL----------TTYPLAGAQTPTSPLAKSSPDRSRTVSPT--ASIRSSMLRSPGIG-- 232
            ||:|.::|          ||.|.:.|.:||......|....:..|||  |:..|.::||....  
Zfish   111 IFTRPSKLSSTEGEADGTTTAPPSRAASPTPSTTSVSASSKKPASPTKAAAPTSDLVRSKSESVS 175

  Fly   233 ----------GKNGMAVGDRVIVSSGFGSRPGILRYLGETQFAPGNWCGVELDEPSGKNDGTVDD 287
                      |:..:.:.|||:|:   ||:.|::|:||||.||.|.|||||||||.|||||.|..
Zfish   176 NLSESGSVKKGERELKINDRVLVA---GSKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAG 237

  Fly   288 IRYFECKPKYGVFVPIAKV------SLSPSSKKTRLSRTGSRESLT-----------SIGTMNSI 335
            .|||:|:||||:|.|:.||      |.:|:..||.:.:|.:..:.|           ||.:|:|:
Zfish   238 TRYFQCQPKYGLFAPVHKVTRIGFPSTTPAKAKTTVRKTTATTAATPSALKRSPSASSISSMSSV 302

  Fly   336 ATTATSRMRMNAQQRKSSTPV-KPILATPKSQFSMQDLLREKQQHVEKLMVERDLDREDAQNQAL 399
            |::|:.:........::||.. :.|..|.    ::|:.|:|||||:|:|:.||||:|.    :..
Zfish   303 ASSASCKPSRTGLLTETSTRYSRKISGTT----ALQEALKEKQQHIEQLLAERDLERA----EVA 359

  Fly   400 QLQKNINEVIIFTDTMYAPLPYADRSRPYRPSKKSRVKVPQQQHIWVPTTLSSSITTSTSTRPTI 464
            :...::.||                                :|.:   |.|...           
Zfish   360 KATNHVGEV--------------------------------EQEL---TLLREG----------- 378

  Fly   465 AAATAAAAAAAACNRQPLQQQQQPHLHQKQQQAKPKKVWFCDKKKLFPLKARIVELESALDNERK 529
                              |:|....::.|..|.: ..|...|::|        |||.:.|:.|::
Zfish   379 ------------------QEQYASEVNDKMDQLR-ALVEAADREK--------VELLNQLEEEKR 416

  Fly   530 KTEELQCSIDEAQFCGDELNAQSQVYKEKIHDLESKITKLVSATPSLQSILPPDLPSDDGALQEE 594
            |.|:||..::||.....:|..|:|:....:.:||..:....:....||..|.          ...
Zfish   417 KVEDLQFRVEEACITKGDLETQTQLEHALLKELEQSLLFEKTKAEKLQRELE----------DSR 471

  Fly   595 IAKLQEKMTIQQKEVESRIAEQLEEEQRLRENVKYLNEQIATLQSELVSKDEALEKFSLSECGIE 659
            :|.:.||..|  .|:|..::.:.:|...||::::.|:.|.....|.:.:                
Zfish   472 VATVSEKSRI--LELERDLSMKDKESAALRKSLEALSSQDGVCDSAVAA---------------- 518

  Fly   660 NLRRELELLKEENEKQAQEAQAEFTRKLAEKSVEVLRLSSELQNLKATSDSLESERVNKTDECEI 724
             |:.:|.|::.:..:|:...|||.:....:...:.......|.:|:|:     |.|::|.:| ::
Zfish   519 -LQEQLSLIRSQQAEQSHSHQAELSSMREKLEAQEKAHREALMHLQAS-----SSRLSKDNE-QL 576

  Fly   725 LQTEVRMRDEQIRELNQQLDEVTTQLNVQKADSSALDDMLRLQKEGTEEKSTLLEKTEKELVQSK 789
            |....:.::|....:.|..|::.   :|:.:...||:::...::....|.|..||:.:.......
Zfish   577 LAELAKSKEENSNVVEQWSDKLK---SVEASHQQALEELKTSREASKAELSDALERLKSTHKLEL 638

  Fly   790 EQAAKTLNDK------EQLEKQISDLKQLAEQEKLVREMTENAINQIQLEKESIEQQLALKQNEL 848
            |:.||..:.:      |.:|.:...||...|.|:.| ||..:::.:.:      ||.|.    ||
Zfish   639 EELAKKHSSEAAGWVGEGMEHKAQLLKVAEENERQV-EMLRSSLEKAE------EQHLV----EL 692

  Fly   849 EDFQKKQSESEVHLQE-------IKAQNTQKDFELVESGESLKKLQQQLEQKTLGHEKLQAALEE 906
            ||...|...:|:.::|       |..|..:|..|.:|..|:|:.||.|..|   |::::|..|.:
Zfish   693 EDAMGKLHAAELRVKELEDSGVKISEQLKEKVQEALEQSEALQSLQTQHSQ---GNQEMQRLLSQ 754

  Fly   907 LKKEKETIIKEKEQELQQLQSKSAESESALKVVQVQLEQLQQQAAASGEEGSKTVAKLHDEISQL 971
            :::.|.   |.:.||     .|..|..|.|:|.|.:|..|.|:.::           |..|:|.|
Zfish   755 VEEAKS---KARSQE-----EKVTELNSVLEVKQQELSGLLQEKSS-----------LEQEVSLL 800

  Fly   972 KSQAEETQSELKSTQSNLEAKSKQLEAANGSLEEEAKKSGHLLEQITKLKSEVGETQAALSSCHT 1036
            |...|:|        :|.:|||.|   .|..|:||.:...   ::.|.|.:|:.:|::.|:... 
Zfish   801 KQNLEKT--------TNDQAKSSQ---TNQELQEELRNKE---DKCTSLSAELQDTKSQLAGLQ- 850

  Fly  1037 DVESKTKQLEAANAALEKVNKEYAESRAEASDLQDKVKEITDTLHAELQAERSSSSALHTKLSKF 1101
                  :.|:|:......:.|:  :::.| :|:.|..|...|            ||.|.|||   
Zfish   851 ------RSLKASEERCLLLTKD--KTKLE-NDIMDMTKSSGD------------SSTLITKL--- 891

  Fly  1102 SDEIATGHKELTSKADAWSQEMLQKEKELQELRQQLQDSQD---------SQTKLKAEGERKE-- 1155
                              ::|..:||..|:||::||::.::         |.|:::.|.|.|.  
Zfish   892 ------------------NEENKRKEGRLEELQKQLEEEREKTAQTEEKLSHTRVQTENEAKSLM 938

  Fly  1156 KSFEESIKNLQEEVTKAKTENLELSTGTQTTIKDLQ---ERLEITNAELQHKEKMASEDAQKIAD 1217
            :..:..:.||||:: |...:::|   ......|||.   |:.....|||..|||.         :
Zfish   939 QKHQAELANLQEKI-KLLEKSIE---DNHAKAKDLHASGEKALTDAAELHSKEKQ---------E 990

  Fly  1218 LKTLVEAIQVANANISATNAELSTVLEVLQAEKSETNHIFELFEMEADMNSERLIEKVTGIKEEL 1282
            |::..|.:|...:.....:.||...:|.|...|.:| .:.|..|..|..:.|::.:....::::.
Zfish   991 LQSKYEKVQQELSASQNESLELRKQIEELMTFKEKT-AVLEKAEEAARASLEKMTQDNLQLQKDK 1054

  Fly  1283 KETHLQLDERQKKFEELEEKLKQAQQSEQKLQQESQTSKEKLTEIQQSLQELQDSVKQKEELVQN 1347
            .::..|:...:...:|::.||...:|...:.::...:..::::.:.:.:::|:.:|.:|.:.|.:
Zfish  1055 SDSEAQVTALRNTVQEMQSKLDALKQQNTQYEESLSSDGQRISSLSKEIEDLKQAVAEKSQAVDD 1119

  Fly  1348 LEEKVRESSSIIEAQNTKLNESNVQLENKTSCLKETQDQLLESQKKEKQLQEEAAKLSGELQQ-V 1411
            |  |..:...:::..|:. .:||:.|..|..| ....:||.|::.:|...:.|:.|....||| :
Zfish  1120 L--KNEKEKLVVDLANSH-KDSNIILNLKKEC-DRLNEQLKEAKTRESSFRSESEKEKAALQQTL 1180

  Fly  1412 QEANGDIKDSLVKVEELVKVLEEKLQAATSQLDAQQATNKELQELLVKSQENEGNLQGESLAVTE 1476
            |..:|           ||...:::|.:..::|||.:..|.:.||.|....|...:|       ::
Zfish  1181 QTQSG-----------LVSEKDKELNSLRNELDALKQQNSQYQESLSSDSERINSL-------SK 1227

  Fly  1477 KLQQLEQANGELKEAL----CQKENGLKELQGKLDESNTVLESQKKSHNEIQDKLEQAQQKERTL 1537
            ::::|:||..|..:|:    .:||....:|...|.:||.:|..:|:..| :.|:|::.:::|.||
Zfish  1228 EIEELKQAAVEKSQAVDDLKNEKEKLTMDLANSLKDSNILLNLKKECDN-LNDQLKELKKRESTL 1291

  Fly  1538 QEETSKLAEQLSQLKQANEELQKSLQ-QKQLLLEKGNEFDTQLAEYQKVIDEMDDAASVKSALLE 1601
            ..|:.|          ....||:||| |..|:.||..|.|:...|.:|..|.:       ::.|:
Zfish  1292 TSESEK----------EKAALQQSLQTQSALISEKDKELDSVRNELKKERDSL-------NSQLK 1339

  Fly  1602 QLQNRVAELETALRQANDAQKTAYLETKELRRQLESLELEKSREVLSLKAQMNG---------AS 1657
            :::.|    |:.|.:..:.:|.|..::.:.:..|.|   ||.:|:.|::.:|.|         :|
Zfish  1340 KMEMR----ESTLTKETEKEKAALQQSLQTQSALIS---EKDKELDSMRNEMGGLRDQTQTLQSS 1397

  Fly  1658 SRSGKGDEVESLD----IETSLA-----------------------------KINFLNSIIADMQ 1689
            .:|.|.:.::..:    :|.|||                             ::.||||:|.::|
Zfish  1398 LKSQKSENIQLQERLKGLERSLADAQIPSKGDNASDDSALRMWKEAKENAEHQVEFLNSVIVELQ 1462

  Fly  1690 QKNDALKAKVQTLE--------TLPMDFTKPHAFDALTKRKPAPRLFCDICDEFDQHDTEDCPIQ 1746
            :||:.||:|::.:.        ...||.......:...|:||.|||||||||.||.|||||||.|
Zfish  1463 RKNEDLKSKLEKMAEAALNGNGAAEMDSRNNSHTEPAIKKKPPPRLFCDICDCFDLHDTEDCPTQ 1527

  Fly  1747 GS-EDQDYSTPSSESNNNEKERKLPAPRKYCDSCEVFGHDTSECADDETY 1795
            .. ||....|....|.|:|        |.|||.||||||.|..|.||:|:
Zfish  1528 DQMEDSPPHTTYHGSPNDE--------RPYCDICEVFGHWTDSCNDDQTF 1569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CLIP-190NP_001368962.1 PHA03307 <2..>118 CDD:223039 20/65 (31%)
CAP_GLY 125..189 CDD:396049 40/63 (63%)
CAP_GLY 239..306 CDD:396049 40/66 (61%)
SMC_prok_B <546..912 CDD:274008 81/378 (21%)
Smc 734..1591 CDD:224117 211/889 (24%)
SHE3 1502..1702 CDD:293683 60/242 (25%)
CLIP1_ZNF 1773..1789 CDD:406934 11/15 (73%)
clip1aXP_009300267.1 CAP_GLY 55..118 CDD:279625 40/62 (65%)
CAP_GLY 193..256 CDD:279625 40/65 (62%)
Smc <333..1004 CDD:224117 198/888 (22%)
SCP-1 709..1402 CDD:114219 195/832 (23%)
COG7 720..>871 CDD:287200 49/195 (25%)
SPEC 940..1119 CDD:295325 38/192 (20%)
GluZincin 1227..>1365 CDD:301352 41/159 (26%)
CLIP1_ZNF 1507..1524 CDD:293247 14/16 (88%)
CLIP1_ZNF 1547..1563 CDD:293247 11/15 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574807
Domainoid 1 1.000 253 1.000 Domainoid score I2025
eggNOG 1 0.900 - - E1_COG5244
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 518 1.000 Inparanoid score I1239
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1110101at2759
OrthoFinder 1 1.000 - - FOG0002895
OrthoInspector 1 1.000 - - otm24265
orthoMCL 1 0.900 - - OOG6_104816
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1398
SonicParanoid 1 1.000 - - X2251
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.690

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