DRSC/TRiP Functional Genomics Resources

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Protein Alignment CLIP-190 and Clip3

DIOPT Version :9

Sequence 1:NP_001368962.1 Gene:CLIP-190 / 35042 FlyBaseID:FBgn0020503 Length:1795 Species:Drosophila melanogaster
Sequence 2:NP_001074583.1 Gene:Clip3 / 76686 MGIID:1923936 Length:547 Species:Mus musculus


Alignment Length:321 Identity:102/321 - (31%)
Similarity:160/321 - (49%) Gaps:54/321 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 IPQPSKM---KAPSSFGSTGSVSKIGRPCCNHTTPKSGPPPREATSMSRESDDNLSSINSAYTDN 111
            :|.|..|   ||.::.     |:|..|.......|.|...|:               :.....||
Mouse   238 VPDPMDMSLDKAEAAL-----VAKELRTLLEEAVPLSCTLPK---------------VTLPNYDN 282

  Fly   112 SSAVLTANTEQFIIGQRVWLGGTRPGQIAFIGDTHFAAGEWAGVVLDEPNGKNDGCVSGKRYFQC 176
            ....|..:.....:|.||.|.|.:.|.:.|.|.|.||:|:|.||.||||.|||||.|.|.|||.|
Mouse   283 VPGNLMLSALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFIC 347

  Fly   177 EPKRGIFSRLTRLT----TYPLAGAQTPTSPLAKSS--------PDRSRTVSPTASIRSSMLRSP 229
            .||:|:|:.:::::    ..|.:...||.:|....|        ..:.:..||::....|:.:..
Mouse   348 PPKQGLFASVSKVSKAVDAPPSSVTSTPRTPRMDFSRVTGKGRREHKGKKKSPSSPSLGSLQQRE 412

  Fly   230 GIGGKNGMAVGDRVIVSSGFGSRPGILRYLGETQFAPGNWCGVELDEPSGKNDGTVDDIRYFECK 294
            |...:    |||:|:|:   |.:.||:|:.|:|.||||.|.|:|||:|:||:||:|..:|||.|.
Mouse   413 GAKAE----VGDQVLVA---GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCA 470

  Fly   295 PKYGVFVPIAKV-----SLSP------SSKKTRLSRTGSRESLTSIGTMNSIAT-TATSRM 343
            |::|||.|.:::     |..|      :.|..:::.|..:.:.|::.|...||: .:.||:
Mouse   471 PRHGVFAPASRIQRIGGSTDPPGDSVGAKKVHQVTMTQPKRTFTTVRTPKDIASENSISRL 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CLIP-190NP_001368962.1 PHA03307 <2..>118 CDD:223039 14/70 (20%)
CAP_GLY 125..189 CDD:396049 34/63 (54%)
CAP_GLY 239..306 CDD:396049 35/66 (53%)
SMC_prok_B <546..912 CDD:274008
Smc 734..1591 CDD:224117
SHE3 1502..1702 CDD:293683
CLIP1_ZNF 1773..1789 CDD:406934
Clip3NP_001074583.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..49
ANK 1 117..158
ANK repeat 120..157 CDD:293786
Ank_2 122..228 CDD:403870
ANK repeat 159..190 CDD:293786
ANK 2 160..191
ANK 3 197..229
ANK repeat 198..228 CDD:293786
CAP_GLY 296..360 CDD:396049 34/63 (54%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 365..413 8/47 (17%)
CAP_GLY 418..482 CDD:396049 35/66 (53%)
GoLD 488..547 10/44 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5244
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D463666at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1398
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.850

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