DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CLIP-190 and Cep350

DIOPT Version :9

Sequence 1:NP_001368962.1 Gene:CLIP-190 / 35042 FlyBaseID:FBgn0020503 Length:1795 Species:Drosophila melanogaster
Sequence 2:XP_006529963.1 Gene:Cep350 / 74081 MGIID:1921331 Length:3140 Species:Mus musculus


Alignment Length:2115 Identity:413/2115 - (19%)
Similarity:758/2115 - (35%) Gaps:564/2115 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 GATASKLPGPIRSNIPTPATSGTGIPQPSKMKAPSSFGSTGSVSKIGRPCCNHTTPKSGPPPREA 90
            |.|.||  ||..........|...|...|.......|...|::  :.||.....||.|       
Mouse  1043 GGTQSK--GPWEELAKGSPHSVINIFTKSYQLYGKGFEDRGTL--VSRPLNATATPLS------- 1096

  Fly    91 TSMSRESDDNLSSINSAYTDNSSAVLTANTEQFIIG-QRVWLGGTRPGQIAFIGDT--HFAAGEW 152
             |:|.| ||.:||..|.......:.|.:..:...:| |...|.......:|.:..|  |.:....
Mouse  1097 -SVSYE-DDFVSSPGSGTLTERKSTLESQVDGSSLGVQEEHLSRQFACDLASVDATSQHSSGARS 1159

  Fly   153 AGVVLDEPNGKNDGCVSGKRYFQCEPKRGIFSRLTRLTTYPLAGAQTPTSPLAKSSPDRSRTVSP 217
            ||      :.::.....||:     .|:.....|..||    ..||.|.....|...|..|...|
Mouse  1160 AG------STRSSSASKGKK-----GKKDKMDWLDSLT----GSAQNPLIDEEKVQSDSERGSHP 1209

  Fly   218 TASIRSSMLRSPGIGGKNGMAVGDRVIV-------------SSGFGSRPGILRYLGETQFAPGNW 269
            :        |..|.|.|  :||||....             |....|..|..:....:..:|.:.
Mouse  1210 S--------RKLGTGSK--LAVGDSEQTLDAESTLEDLSGHSVSGSSDKGRSQKTPTSPLSPSSQ 1264

  Fly   270 CGVELDEPSGKNDGTVDDIRYFECKPKYGVFVPIAKVSLSPSS-----KKTRLSRTGSRESLTSI 329
            ..::.|.|     ||..:      :.|..|.||.......|::     .||.::.....:..:..
Mouse  1265 KLLQFDLP-----GTSLE------RSKSSVIVPPTTTGFKPTAAFTDVNKTEMASAPGPQRFSPA 1318

  Fly   330 GTMNSIATTAT--SRMRMNAQQRKSSTPVKPILATPKSQFSMQDLLREKQQ-HVEKLMVERDLD- 390
            |..:.:|...:  |.:..:.:|......|:.|....:...|:..:::.:|| |      ||||. 
Mouse  1319 GLQHRMAAELSYLSALEESVRQLSDVERVRGIALAQQESVSLAQIIKAQQQRH------ERDLAL 1377

  Fly   391 -REDAQNQALQLQKNINEVIIFTDTMYAPLPYADRSRPYRPSKKSRVKVPQQQHIWVPTTLSSS- 453
             :..|:.:||:.|:.:.|    |....|.: :|:..:....|::...:|.|:....:....|.: 
Mouse  1378 LKLKAEQEALECQRQLEE----TRNKTAQV-HAESLQQVVKSQREVTEVLQEATCKIAAQQSETA 1437

  Fly   454 -ITTSTS---------TRPTIAAATAAAAAAAACNRQPLQQQQQPHLHQKQQQAKPKKVWFCDKK 508
             :||..:         ||..:|.|...:....|    .|...|:.|.....::.:.|..  .|..
Mouse  1438 RLTTDAARQICEMAELTRTHLADAITTSGVPLA----TLYDHQRQHFPDFMRKLRTKAE--TDSF 1496

  Fly   509 KLFPLKARIVELESALDNERKKTEELQCSIDEAQFCGDELNAQSQVYKEKIHDLESKITKLVSAT 573
            ::....:.....|.|:|::|:|....:.|..|:.             :.|.||..|........:
Mouse  1497 RISHSASHSQSKEGAVDSKRQKFSPSRDSYSESS-------------RYKSHDYRSSSGSSRQDS 1548

  Fly   574 PSLQSILPPDLPSDDGALQEEIAKLQEKMTIQQKEVESRIAEQLE--EEQRLR-ENVKYLNEQ-- 633
            ||    :||             :|..|| ....:::||.:.|||:  .:..|| :::..|.::  
Mouse  1549 PS----VPP-------------SKENEK-PFHGEKMESSVDEQLQTAADDSLRSDSIPSLPDEKD 1595

  Fly   634 ---IATLQS----ELVSKDEALEKFSLSECGIENLRR-ELELLKEENEKQAQEAQAEFTRKLAEK 690
               |||..|    |.:::||..||...|....|:.|| .:|..:..::...::|..:.|...:.|
Mouse  1596 STSIATEYSLKFDESMTEDEIEEKSFRSLLPSESHRRFNMEKKRGHHDDSDEDASPDKTALSSTK 1660

  Fly   691 SVEVLRLSSELQNLKATSDSLESERVNKTDECEILQTEVRMRDEQIRELNQQLDEVTTQLNVQKA 755
                 .||......:.:......|.|.:           .|::|::|..:|              
Mouse  1661 -----ELSMPFSGGQDSFSKFTMEMVRQ-----------YMKEEEVRAAHQ-------------- 1695

  Fly   756 DSSALDDMLRLQKEGTEEKSTLLEKTEKELVQSKEQAAKTLNDKEQ-----------------LE 803
                 ..:|||:::      .|.|||:.||...:.| .|.|.||.:                 |:
Mouse  1696 -----SSLLRLREK------ALKEKTKAELAWLEHQ-KKHLRDKGEDDKMPPLRKKQRGLLLRLQ 1748

  Fly   804 KQISDLKQLAEQEKLVREMTENAINQIQLEKESIEQQLALKQNELEDFQKKQ------------- 855
            ::.:::|:|.|..|..|:..:..:.| |.|.|.|.|.....|.:|:...:|:             
Mouse  1749 QEKAEIKRLQEANKAARKERQLILKQ-QEEIERIRQTTIKLQEKLKSAGEKKLGSLADDDEAEDN 1812

  Fly   856 ----------------------SESEVHLQEIKAQNTQKD------------------------- 873
                                  ||:...:|::|:..::.|                         
Mouse  1813 KAASPGPPGLETRSPSPISISSSETSSIMQKLKSMRSRMDEKHCSPVHYFFSVFTSHHWASLSVC 1877

  Fly   874 -------FELV---ESGESLKKLQQQLEQKTLGHEKL----------QAALEELKK------EKE 912
                   |:|.   :....|.|.:|:|.|:....|:|          :|.:::::|      :||
Mouse  1878 FPNLHPKFQLYIYNQLVRFLTKREQKLMQRRQHAEELLEWKRRLDAEEAEIQQMEKQALAAWDKE 1942

  Fly   913 TI---IKEKEQELQQLQSKSAESESALKVVQVQLEQ----------------LQQQAAASGEEGS 958
            .:   ..:||||.|:.:.|...||....:.......                :..:|....:.||
Mouse  1943 LVKPRTPKKEQESQRTEQKGIASEEGSPMPSYSPRNSESCIPEDLGSPSDLCVPSEARVQAQPGS 2007

  Fly   959 KTVAKLHDEI---SQLKSQAEETQSELKSTQSNLEAKSKQLEAANGSLEEEAKKSGHLLEQITKL 1020
            ...:.|.:|:   .:|:|.:....|..||..|    .|||          |:.|:.|..|     
Mouse  2008 PEHSTLTEEMVFSQELESTSPSKHSPPKSCLS----MSKQ----------ESSKASHRTE----- 2053

  Fly  1021 KSEVGETQAALSSCHTDVESKTKQLEAANAALEKVNKEYAESRAEASDLQDKVKEITDTLHAELQ 1085
                       ..||..|:|.......::   |.::...:|:.::.||::.:::.:.|    ||:
Mouse  2054 -----------GHCHLPVKSHQPCYSWSD---ESLSMTQSETTSDQSDIEGRIRALKD----ELR 2100

  Fly  1086 AERSSSSALHTKLSKFSDE-IATGHKELTSKADAWSQEMLQKEKELQELRQQLQDSQDSQTKLKA 1149
            ..:|....|..:..|...| :......|..:.:.:.:.:.:.|.||.   |.|..|..|:.::|.
Mouse  2101 KRKSVVEQLKREQRKRQKERLKAQEASLLRQLETYDEFIKKTEGELS---QDLDISPTSKFQMKT 2162

  Fly  1150 EGERKEKSFEESIK--NLQEEVT----KAKTENLELSTGTQTTIKDLQERLEITNAELQHKEKMA 1208
            .....||   ..||  .|....|    |:.||: |.|.|:..:|.:..:. .::.:|....|:..
Mouse  2163 LSSVSEK---PKIKPHPLHRSETAKTWKSVTES-ERSRGSLASIAEHVDS-SLSCSERAISERSL 2222

  Fly  1209 SEDAQKIADLKTLVEAIQVANANISATNAE------------LSTVLEVLQAEKSETNHIFELFE 1261
            |..|::..:|.:.:|.:|.::.::|:..|:            ||.|.|:     :..:.|:::.|
Mouse  2223 SAYAKRGVELDSRIEHLQASSPDLSSRKAQTESRDSLESAPSLSPVKEL-----NAPDRIYDVSE 2282

  Fly  1262 MEADMNSERL-IEKVTGIKEELKETH-------------LQLDERQKKF--EELEEKLKQAQQSE 1310
            .:|:..|::. |:::..:|.|..|..             |:||...:..  :||.......||..
Mouse  2283 AKAEDTSQKSEIQEIESMKLESSEVEDACCKQSGGSEVLLKLDLASETLSSKELPSDSANVQQDL 2347

  Fly  1311 QKLQQESQTSKEKLTEIQQSLQELQDSVKQKEELVQNLEEKVRES-SSIIEAQNTKLNESNVQLE 1374
            .|...|:...||:..:..||.....|.....:......|:..||| .|....|.:...||:...:
Mouse  2348 DKPATETSHEKEEALKEDQSNHSTDDRSPDIQSAGGIPEQGCRESGDSTCSGQLSVPKESSYSED 2412

  Fly  1375 NKTSCLKE--TQDQLLE---------SQKKEKQLQEEAAKLSGELQQVQEANGDIKDSLVKVEEL 1428
            .:.|..::  :.|::.:         |.:|:.|...:.::|:...:  ..|.|...|     ||:
Mouse  2413 FEVSSFRKGISADEISKDDSEGSSPSSLRKDSQSHRDRSQLTRSSR--SRATGSGSD-----EEI 2470

  Fly  1429 VKVLEEKLQAATSQLDAQQATNKELQELLVKSQENE--GNLQGES----LAVTEKL--------- 1478
            .:.|.||..:..|.:.:::.........|:||:|..  |:.||.:    ||.||:|         
Mouse  2471 SECLGEKSLSVHSGVHSERLLELRSPTELMKSKERSDVGHEQGGTEPLPLAATEELLDFHIGDRV 2535

  Fly  1479 -------------------------QQLEQANGE-------LKEALCQKENGLKELQGKLDE--- 1508
                                     .:|::..|.       :...:|:.::|:.....|:..   
Mouse  2536 LIGSVQPGTLRFKGETDFAKGFWAGVELDKPEGNNNGTYDGIVYFVCKDKHGIFAPPQKISHLLE 2600

  Fly  1509 --SNTVLESQKKSHNEIQDKLEQAQQKE-RTLQEETSKLAE-----QLSQLKQANEELQKSLQQK 1565
              .:|.:...::|:::.|.:....:||: :.|::..:.:||     .|..:...:..:.|     
Mouse  2601 NFDDTDINEDEESYSDEQYQPYNQEQKDIKCLKDRENNIAEYFCEKSLPSMHNTDASVDK----- 2660

  Fly  1566 QLLLEKGNEFDTQLAEYQKVIDEMDDAASVKSALLEQLQNRV-----AELETALRQANDAQKTAY 1625
                ::....:|..:|..:|......:.   ..|:...:|:|     .|...|...|..:..|..
Mouse  2661 ----DRSLNIETDTSEVLEVHGHQQPSV---DPLISYKENKVLVSDATESVPAAAGAATSDNTFS 2718

  Fly  1626 LETKELRRQLESLE-------LEK---------SREVLSLKAQMNGASSRSGKG-DEVESLDIET 1673
            .|:|:  :||...|       |||         :||...|:||:..:.|...|. .::|::.:.|
Mouse  2719 GESKQ--QQLAEKEENFYSQVLEKPSTPLLDLLTREKNQLEAQLKSSISEEKKSKQQLETVSLLT 2781

  Fly  1674 -SLAKINFLNSIIADMQQKNDALKAKVQTLETLPMDFTK------PHAFDALTKRKPAPRLFCDI 1731
             ||.:: |:...::.:||...|...|:|......:|..|      |...:..:...|:..|..::
Mouse  2782 DSLLQV-FVKDTVSQLQQVKKARNEKIQLSNQEFLDQKKVPPQDLPQNTEEQSPSVPSCFLRSEL 2845

  Fly  1732 CDEFDQHDTED-CP--------IQGSE-------------------------DQDYSTPSSE--S 1760
            .||.::..:.| ||        ..|.|                         |:|:...||.  .
Mouse  2846 EDEKEEISSPDMCPRPESPVFGASGQEELAKRLAELEISREFLSALDDQDWFDEDFGLSSSHKIQ 2910

  Fly  1761 NNNEKERKLP-------APRKYCDSCEVFGHDTSE 1788
            .|..:|..:|       ||:|.|::.....|...|
Mouse  2911 KNKAEETIVPLMAEPKRAPQKPCETLLAVPHTAEE 2945

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CLIP-190NP_001368962.1 PHA03307 <2..>118 CDD:223039 25/91 (27%)
CAP_GLY 125..189 CDD:396049 12/66 (18%)
CAP_GLY 239..306 CDD:396049 15/79 (19%)
SMC_prok_B <546..912 CDD:274008 89/481 (19%)
Smc 734..1591 CDD:224117 201/1086 (19%)
SHE3 1502..1702 CDD:293683 46/233 (20%)
CLIP1_ZNF 1773..1789 CDD:406934 4/16 (25%)
Cep350XP_006529963.1 PTZ00121 <1336..>1814 CDD:173412 115/568 (20%)
PTZ00108 <1890..2151 CDD:240271 57/300 (19%)
COG5022 <2095..2375 CDD:227355 64/296 (22%)
NIP100 2531..>2808 CDD:227569 49/291 (17%)
CAP_GLY 2531..2595 CDD:366568 4/63 (6%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5244
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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