DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CLIP-190 and Clip1

DIOPT Version :9

Sequence 1:NP_001368962.1 Gene:CLIP-190 / 35042 FlyBaseID:FBgn0020503 Length:1795 Species:Drosophila melanogaster
Sequence 2:XP_038945655.1 Gene:Clip1 / 65201 RGDID:67404 Length:2202 Species:Rattus norvegicus


Alignment Length:2308 Identity:597/2308 - (25%)
Similarity:966/2308 - (41%) Gaps:674/2308 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 QPSKMKAPSSFGSTGSVSKIGRPCCNHTTPKSGPPPREATSMSRESDDNLSS-INSAYTDNSSAV 115
            :||.:|||:.....||.:.        .||.:...|.|.|..|.::....|| ....:.|:    
  Rat     5 KPSGLKAPTKILKPGSTAL--------KTPAAAAAPLEKTVPSEKASGPPSSETQEEFVDD---- 57

  Fly   116 LTANTEQFIIGQRVWLGGTRPGQIAFIGDTHFAAGEWAGVVLDEPNGKNDGCVSGKRYFQCEPKR 180
                   |.:|:|||:.|.:||.|.|:|:|.||.|:|||:|||||.|||||.|:|.|||||||.:
  Rat    58 -------FRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLK 115

  Fly   181 GIFSRLTRLT-------------------TYPLAGA----------------QTPTSPLAK--SS 208
            |||:|.::||                   ..||:.|                |.|:.|:||  |:
  Rat   116 GIFTRPSKLTRKVQAEDEANGLQTAHARAASPLSTAAATMVSSSPATPSNIPQKPSQPVAKETSA 180

  Fly   209 PDRSRTVSPTASIRSSMLRSPGI--GGKNGMAVGDRVIVSSGFGSRPGILRYLGETQFAPGNWCG 271
            ..:...::.|||...|.|...|.  .|:..:.:||||:|.   |::.|::|:||||.||.|.|||
  Rat   181 TPQISNLTKTASESISNLSEAGSVKKGERELKIGDRVLVG---GTKAGVVRFLGETDFAKGEWCG 242

  Fly   272 VELDEPSGKNDGTVDDIRYFECKPKYGVFVPIAKV------SLSPSSKK------------TRLS 318
            ||||||.|||||.|...|||:|:||||:|.|:.||      |.:|:..|            ..|.
  Rat   243 VELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTPAKAKAAAVRRVMATTPASLK 307

  Fly   319 RTGSRESLTSIGTMNSIATTATSR-MRMNAQQRKSSTPVKPILATPKSQFSMQDLLREKQQHVEK 382
            |:.|..||:|   |:|:|::.:|: .|.......||...:.|..|.    ::|:.|:|||||:|:
  Rat   308 RSPSASSLSS---MSSVASSVSSKPSRTGLLTETSSRYARKISGTT----ALQEALKEKQQHIEQ 365

  Fly   383 LMVERDLDREDAQ---------NQALQL-----QKNINEVIIFTDTMYAPLPYADRSRP--YRPS 431
            |:.||||:|.:..         .|.|.|     .:::.|:....|.:...:..|||.:.  ....
  Rat   366 LLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQL 430

  Fly   432 KKSRVKVPQQQHIWVPTTLSSSITTSTSTRPTIAAATAAAAAAAACNRQPLQQQQQPHLHQKQQQ 496
            ::.:.||...|.    .....|||                       :..|:|:.|.....:..|
  Rat   431 EEEKRKVEDLQF----RVEEESIT-----------------------KGDLEQKSQISEDPENTQ 468

  Fly   497 AKPKKVWFCDKKKLFPLKARIVELESALDNERKKTEELQCSIDEAQFCGDELNAQSQVYK-EKIH 560
            .|.:             .|||.|||.:|..|:.|.::||..:::.:..  .::.:|::.: ||  
  Rat   469 TKLE-------------HARIKELEQSLLFEKTKADKLQRELEDTRVA--TVSEKSRIMELEK-- 516

  Fly   561 DLESKITKLVSATPSLQSILPPDLPSDDGALQEEIAKLQEKMTIQ-------------------- 605
            ||..::.::......|:|..||.......:|.:||:.||||:.:.                    
  Rat   517 DLALRVQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEVTHTDHQNEVTSLKDHFGTREE 581

  Fly   606 --QKEVESRIA--EQL-EEEQRLRENVKYLNEQ----IA----TLQSELVSKDEALEKFSLS--- 654
              |||:::..|  |:| :|.:.||..:.:.|::    ||    .|::.:.|..:|:|:..:|   
  Rat   582 MFQKEIKALHAATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSK 646

  Fly   655 ------------ECGIENLR----RELELL--KEENEKQAQEAQAEFTRKLAEKSVEVLRLSSE- 700
                        :..||.||    .|:|.|  |:::|:.|...:.|   .:..|.:::::...: 
  Rat   647 GIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEME---SMKAKLMKIIKEKEDS 708

  Fly   701 LQNLKATSDSLE-------SERVNKTDECEILQTEVRMRDEQIRELNQQLDEVTTQLNVQKADSS 758
            |:.:||..|:.|       .|.::|..|.||...|:.:...:..|..|.:..:|:||:|.:....
  Rat   709 LEAVKARLDTAEDQHLVEMEEMLSKLQEAEIKVKELEVLQAKYSEQTQVVGHLTSQLSVVEEQLL 773

  Fly   759 ALDDMLRLQKEGTEEKSTL---LEKTEKEL--------------------VQSKE----QAAKTL 796
            .||.:.:...||..|..||   ||..||::                    :|.||    .....|
  Rat   774 DLDALRKANSEGKLEIETLRQQLEGAEKQIKNLEMERNAESSKANSITKDLQGKELMLTSLQSNL 838

  Fly   797 ND----KEQLEKQISDLKQ---------------------------------LAEQEKL------ 818
            |:    ||.|||::..||:                                 .:|.|||      
  Rat   839 NEVNQVKETLEKELQTLKEKFASASEEAVSTQTSMQDTVNKLHQKEEQFNMLSSELEKLRENLTD 903

  Fly   819 -----------------VREMTENAI---------NQIQLEKESIEQQLALKQNELEDFQ---KK 854
                             .:|..||.|         |..||.|  :..:|.||:..:|:.|   .|
  Rat   904 MEAKFKEKDEREDQLVKAKEKLENDIAEIMKMSGDNSSQLTK--MNDELRLKERSVEELQLKLTK 966

  Fly   855 QSESEVHLQE------IKAQNTQKDFELVESGESLKKLQQQLEQKTLGHEK-----------LQA 902
            .:|:...||:      :||:.:|:  |..:..|..||   :||.|.|..||           |:|
  Rat   967 ANENASLLQKSIGEVTLKAEQSQQ--EAAKKHEEEKK---ELENKLLELEKKMETSHYQCQDLKA 1026

  Fly   903 ALEELKKEKETIIKEKE---------------------------QELQQLQSKSAESE------- 933
            ..|  |...||.||.:|                           |::::|:|::.:::       
  Rat  1027 KYE--KASSETKIKHEEILQNFQKMLVDTEDKLKAAQEANRDLMQDMEELKSQADKAKSLTYLLT 1089

  Fly   934 SALKVVQVQLEQLQ----------QQAAASGEEGSKTVAKLHDEISQLKSQAEETQSELKSTQSN 988
            ||.|.::|..|:|:          |:|:|...|....::|| .|:....:..:|.|.:|.|...|
  Rat  1090 SAKKEIEVMSEELRGLKSEKQLFAQEASALKLEKGSLLSKL-IEVETKITLLQEDQQKLWSVNEN 1153

  Fly   989 L----EAKSKQLEAANGSLEEEAKKSGHLLEQITKLKSEVGETQAALSSCHTDVESKTKQLEAAN 1049
            |    |..|::.:.|....::|.:....|:.:..||..|:..||..|...|.:.:|    |||:.
  Rat  1154 LHLEKERISEEKQVAEKRYQQEHRDKESLVVEREKLLKEINVTQEELLKMHMEKDS----LEASK 1214

  Fly  1050 AALEKVNKEY-----------AESRAEASDLQDKVKEITDTLHAELQAERSSSSALHTKLSKFSD 1103
            .:::.:.:|.           .::|||...|:.:||::|    ||..........:..||....:
  Rat  1215 VSMQVLIEELRFCKDKLMAMSEKARAEKEQLEGQVKKLT----AENMVLVKDKDDVIQKLQSAYE 1275

  Fly  1104 EIATGHKEL--------TSKADAWSQEM------LQKEKELQELRQQLQDSQDSQTKLKAEGERK 1154
            |:....|.|        |.|..|..::|      |..:.|.:.|.|..:|.|..:..|:...|:.
  Rat  1276 ELVKDQKALVQEIEDLTTEKKSAAEKQMNLDNTCLTLKAERENLLQSNRDLQFEKDTLRQGQEKL 1340

  Fly  1155 EKSFEESIKNLQEEVTKAKTENLELSTGT-------------QTTIKDLQERLE-------ITNA 1199
            ..|.|.:::..|...|:|:|...:|...|             ||:...|.:.||       ||::
  Rat  1341 SASLEATLQVKQLLSTEAETLRTQLDCATKALRKAELDMRQLQTSNTSLTKLLEEIKTCRAITDS 1405

  Fly  1200 E----LQHKEKMASEDAQKIADLKTLVEAIQVANANIS-----ATNAELS-----TVL------- 1243
            |    |..||.:|:.:...:|:.:.|:...:|....::     .|..|:|     |.|       
  Rat  1406 ECIQLLHEKESLAASERALLAEKEELLNENRVITEKLNKHSEEVTRLEVSLNEKITYLTSEKEMA 1470

  Fly  1244 --EVLQAEKSETNHIFELFEMEADMNSERLIEKVTGIK----------EELKETHLQLDERQK-- 1294
              :|.:.:|.:.:.:.|...:|. .|.:.|.::.:.||          :|.....|.:.|:.|  
  Rat  1471 CQKVARLKKQQDSLLKEKSALEV-QNGDLLADRESSIKAIGDLKRKYEQEATNRRLAVQEKVKLL 1534

  Fly  1295 -KFEELEEKLKQAQQSEQKLQ----------QESQTSKEKL----TEIQQSLQE----------- 1333
             ..:.|:::|:|.::..|:|.          :|:||:|:.|    |.:.|:.::           
  Rat  1535 GNIDALKKELQQRKKENQELASSKCDLSLMLKEAQTAKKNLEKEHTSMMQAKEDLNAELKTCCCE 1599

  Fly  1334 ----LQDSVKQKEELVQNLEEKVRESSSII----EAQ----NTKLNESN---------------- 1370
                |:|.:..:|| .|.|.|::||....:    ||:    .:.|.|||                
  Rat  1600 KNILLRDGLNLQEE-CQKLNEEIREIQQTLMLEKEARAKESESSLYESNKLHGRIVLLEEEIQGL 1663

  Fly  1371 ------VQLENKTSCLKET--QDQLLESQKKEKQLQEEAAKLSG-----------------ELQQ 1410
                  :|.||.|...::|  :.:::|..|:::.|..|.|:|:.                 |||:
  Rat  1664 RTCSEQLQTENFTLTQEKTNSEQKVVEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQE 1728

  Fly  1411 VQ----------------------EANGDIKDSLVKVEELV----KVLEEK---------LQAAT 1440
            :.                      |...|.|:.|.:..|::    :||:||         ||...
  Rat  1729 LHSCLTKILDDLRLNHEVAVTERAEVLQDNKNLLAEKREMMLRNEEVLKEKEKLEESYFVLQKEI 1793

  Fly  1441 SQLDAQQATNKELQELLVKSQENEGNLQGESLAVTEKLQQLE----------------------- 1482
            ||| ||  ||..:...|:::|.....|:.:...:|.|:::||                       
  Rat  1794 SQL-AQ--TNSHISADLLEAQSENRTLRKDKSKLTLKIRELETLHSFTAAQTAEDAMQIMEQMTK 1855

  Fly  1483 -------------QANGELKEAL-CQKENGLKELQ------GKLDESNTVLESQKKSHNEIQDKL 1527
                         |.|.:|:..| ..|||.||.::      ..|:|.|..:|..||....::...
  Rat  1856 EKTETLASLEDTKQTNAKLQSELDTLKENNLKTVEELNKSKELLNEENQKMEEFKKEIETLKQAA 1920

  Fly  1528 EQAQQKERTLQEETSKLAEQLSQLK------QANEELQKSLQQKQLLLEKGNEFDT-QLAEYQKV 1585
            .|..|:...||||..||||:|.:.:      |..||.:..|..:.|.::|....:| :.:||:|.
  Rat  1921 AQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESEYRKD 1985

  Fly  1586 IDE----MDDAASVKSAL-------LEQLQNRVAELETALRQANDAQKTAYLETKELRRQLESLE 1639
            .||    :..:.|:.|||       ||:|:|.|    |.||..|.:.|:.:...:.|......||
  Rat  1986 ADEEKASLQKSISLTSALLTEKDAELEKLRNEV----TVLRGENASAKSLHSVVQTLESDKVKLE 2046

  Fly  1640 LEKSREVLSLKAQMNGASSRSGKGDEVESLD--IETSLAKINFLNSIIADMQQKNDALKAKVQTL 1702
            |:.....|.||......||.||..|.....|  .:.|...|:||||:|.|:|:||..||.||:.:
  Rat  2047 LKVKNLELQLKENKRQLSSSSGNTDVQTEEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMM 2111

  Fly  1703 ETLPMDFT--KPHAFDALTKRKPA---PRLFCDICDEFDQHDTEDCPIQGSEDQDYSTPSSESNN 1762
            ....::..  .|:::|:..:.|.:   |||||||||.||.|||||||.|....:|  .|.|..:.
  Rat  2112 SEAALNGNGEDPNSYDSDDQEKQSKKKPRLFCDICDCFDLHDTEDCPTQAQMSED--PPHSTHHG 2174

  Fly  1763 NEKERKLPAPRKYCDSCEVFGHDTSECADDETY 1795
            :..|.     |.||:.||:|||..:.|.||||:
  Rat  2175 SRSEE-----RPYCEICEMFGHWATNCNDDETF 2202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CLIP-190NP_001368962.1 PHA03307 <2..>118 CDD:223039 16/66 (24%)
CAP_GLY 125..189 CDD:396049 40/63 (63%)
CAP_GLY 239..306 CDD:396049 40/66 (61%)
SMC_prok_B <546..912 CDD:274008 123/544 (23%)
Smc 734..1591 CDD:224117 281/1268 (22%)
SHE3 1502..1702 CDD:293683 71/225 (32%)
CLIP1_ZNF 1773..1789 CDD:406934 8/15 (53%)
Clip1XP_038945655.1 CAP_GLY 60..124 CDD:396049 40/63 (63%)
CAP_GLY 213..277 CDD:396049 40/66 (61%)
SbcC <344..802 CDD:223496 118/508 (23%)
Smc 594..1345 CDD:224117 174/771 (23%)
SMC_prok_B 1047..1919 CDD:274008 186/885 (21%)
pneumo_PspA 1838..>2141 CDD:411490 84/306 (27%)
CLIP1_ZNF 2180..2196 CDD:406934 8/15 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335629
Domainoid 1 1.000 191 1.000 Domainoid score I3141
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 346 1.000 Inparanoid score I2243
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1110101at2759
OrthoFinder 1 1.000 - - FOG0002895
OrthoInspector 1 1.000 - - otm44494
orthoMCL 1 0.900 - - OOG6_104816
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2251
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.800

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