Sequence 1: | NP_001368962.1 | Gene: | CLIP-190 / 35042 | FlyBaseID: | FBgn0020503 | Length: | 1795 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038945655.1 | Gene: | Clip1 / 65201 | RGDID: | 67404 | Length: | 2202 | Species: | Rattus norvegicus |
Alignment Length: | 2308 | Identity: | 597/2308 - (25%) |
---|---|---|---|
Similarity: | 966/2308 - (41%) | Gaps: | 674/2308 - (29%) |
- Green bases have known domain annotations that are detailed below.
Fly 52 QPSKMKAPSSFGSTGSVSKIGRPCCNHTTPKSGPPPREATSMSRESDDNLSS-INSAYTDNSSAV 115
Fly 116 LTANTEQFIIGQRVWLGGTRPGQIAFIGDTHFAAGEWAGVVLDEPNGKNDGCVSGKRYFQCEPKR 180
Fly 181 GIFSRLTRLT-------------------TYPLAGA----------------QTPTSPLAK--SS 208
Fly 209 PDRSRTVSPTASIRSSMLRSPGI--GGKNGMAVGDRVIVSSGFGSRPGILRYLGETQFAPGNWCG 271
Fly 272 VELDEPSGKNDGTVDDIRYFECKPKYGVFVPIAKV------SLSPSSKK------------TRLS 318
Fly 319 RTGSRESLTSIGTMNSIATTATSR-MRMNAQQRKSSTPVKPILATPKSQFSMQDLLREKQQHVEK 382
Fly 383 LMVERDLDREDAQ---------NQALQL-----QKNINEVIIFTDTMYAPLPYADRSRP--YRPS 431
Fly 432 KKSRVKVPQQQHIWVPTTLSSSITTSTSTRPTIAAATAAAAAAAACNRQPLQQQQQPHLHQKQQQ 496
Fly 497 AKPKKVWFCDKKKLFPLKARIVELESALDNERKKTEELQCSIDEAQFCGDELNAQSQVYK-EKIH 560
Fly 561 DLESKITKLVSATPSLQSILPPDLPSDDGALQEEIAKLQEKMTIQ-------------------- 605
Fly 606 --QKEVESRIA--EQL-EEEQRLRENVKYLNEQ----IA----TLQSELVSKDEALEKFSLS--- 654
Fly 655 ------------ECGIENLR----RELELL--KEENEKQAQEAQAEFTRKLAEKSVEVLRLSSE- 700
Fly 701 LQNLKATSDSLE-------SERVNKTDECEILQTEVRMRDEQIRELNQQLDEVTTQLNVQKADSS 758
Fly 759 ALDDMLRLQKEGTEEKSTL---LEKTEKEL--------------------VQSKE----QAAKTL 796
Fly 797 ND----KEQLEKQISDLKQ---------------------------------LAEQEKL------ 818
Fly 819 -----------------VREMTENAI---------NQIQLEKESIEQQLALKQNELEDFQ---KK 854
Fly 855 QSESEVHLQE------IKAQNTQKDFELVESGESLKKLQQQLEQKTLGHEK-----------LQA 902
Fly 903 ALEELKKEKETIIKEKE---------------------------QELQQLQSKSAESE------- 933
Fly 934 SALKVVQVQLEQLQ----------QQAAASGEEGSKTVAKLHDEISQLKSQAEETQSELKSTQSN 988
Fly 989 L----EAKSKQLEAANGSLEEEAKKSGHLLEQITKLKSEVGETQAALSSCHTDVESKTKQLEAAN 1049
Fly 1050 AALEKVNKEY-----------AESRAEASDLQDKVKEITDTLHAELQAERSSSSALHTKLSKFSD 1103
Fly 1104 EIATGHKEL--------TSKADAWSQEM------LQKEKELQELRQQLQDSQDSQTKLKAEGERK 1154
Fly 1155 EKSFEESIKNLQEEVTKAKTENLELSTGT-------------QTTIKDLQERLE-------ITNA 1199
Fly 1200 E----LQHKEKMASEDAQKIADLKTLVEAIQVANANIS-----ATNAELS-----TVL------- 1243
Fly 1244 --EVLQAEKSETNHIFELFEMEADMNSERLIEKVTGIK----------EELKETHLQLDERQK-- 1294
Fly 1295 -KFEELEEKLKQAQQSEQKLQ----------QESQTSKEKL----TEIQQSLQE----------- 1333
Fly 1334 ----LQDSVKQKEELVQNLEEKVRESSSII----EAQ----NTKLNESN---------------- 1370
Fly 1371 ------VQLENKTSCLKET--QDQLLESQKKEKQLQEEAAKLSG-----------------ELQQ 1410
Fly 1411 VQ----------------------EANGDIKDSLVKVEELV----KVLEEK---------LQAAT 1440
Fly 1441 SQLDAQQATNKELQELLVKSQENEGNLQGESLAVTEKLQQLE----------------------- 1482
Fly 1483 -------------QANGELKEAL-CQKENGLKELQ------GKLDESNTVLESQKKSHNEIQDKL 1527
Fly 1528 EQAQQKERTLQEETSKLAEQLSQLK------QANEELQKSLQQKQLLLEKGNEFDT-QLAEYQKV 1585
Fly 1586 IDE----MDDAASVKSAL-------LEQLQNRVAELETALRQANDAQKTAYLETKELRRQLESLE 1639
Fly 1640 LEKSREVLSLKAQMNGASSRSGKGDEVESLD--IETSLAKINFLNSIIADMQQKNDALKAKVQTL 1702
Fly 1703 ETLPMDFT--KPHAFDALTKRKPA---PRLFCDICDEFDQHDTEDCPIQGSEDQDYSTPSSESNN 1762
Fly 1763 NEKERKLPAPRKYCDSCEVFGHDTSECADDETY 1795 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CLIP-190 | NP_001368962.1 | PHA03307 | <2..>118 | CDD:223039 | 16/66 (24%) |
CAP_GLY | 125..189 | CDD:396049 | 40/63 (63%) | ||
CAP_GLY | 239..306 | CDD:396049 | 40/66 (61%) | ||
SMC_prok_B | <546..912 | CDD:274008 | 123/544 (23%) | ||
Smc | 734..1591 | CDD:224117 | 281/1268 (22%) | ||
SHE3 | 1502..1702 | CDD:293683 | 71/225 (32%) | ||
CLIP1_ZNF | 1773..1789 | CDD:406934 | 8/15 (53%) | ||
Clip1 | XP_038945655.1 | CAP_GLY | 60..124 | CDD:396049 | 40/63 (63%) |
CAP_GLY | 213..277 | CDD:396049 | 40/66 (61%) | ||
SbcC | <344..802 | CDD:223496 | 118/508 (23%) | ||
Smc | 594..1345 | CDD:224117 | 174/771 (23%) | ||
SMC_prok_B | 1047..1919 | CDD:274008 | 186/885 (21%) | ||
pneumo_PspA | 1838..>2141 | CDD:411490 | 84/306 (27%) | ||
CLIP1_ZNF | 2180..2196 | CDD:406934 | 8/15 (53%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166335629 | |
Domainoid | 1 | 1.000 | 191 | 1.000 | Domainoid score | I3141 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 346 | 1.000 | Inparanoid score | I2243 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1110101at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0002895 | |
OrthoInspector | 1 | 1.000 | - | - | otm44494 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_104816 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X2251 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
11 | 10.800 |