DRSC/TRiP Functional Genomics Resources

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Protein Alignment CLIP-190 and NBPF14

DIOPT Version :9

Sequence 1:NP_001368962.1 Gene:CLIP-190 / 35042 FlyBaseID:FBgn0020503 Length:1795 Species:Drosophila melanogaster
Sequence 2:NP_001382560.1 Gene:NBPF14 / 25832 HGNCID:25232 Length:2988 Species:Homo sapiens


Alignment Length:1660 Identity:321/1660 - (19%)
Similarity:562/1660 - (33%) Gaps:542/1660 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   464 IAAATAAAAAAAACNRQPLQQQQQPHLHQKQQQAKPKKVWFCDKKKLFPLKARIVELESALDNER 528
            :.:|...::..|..|...:.:..:|.|.:|:||.:..      |:|.|     :.:|...|.|::
Human     2 VVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRNL------KEKCF-----LTQLAGFLANQQ 55

  Fly   529 KKTEELQCS-------IDEAQFCGDELNAQ------SQVYKEKIHDLESKITKL----------- 569
            ||.:..:|.       .:|.||..::|..|      .:.||..:|..|.::|:|           
Human    56 KKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDAS 120

  Fly   570 VSATPSLQSILPPDLPSDDGALQEEIAKLQEKMTIQQKEVESRIAEQLEEEQRLRENVKYLNEQI 634
            .|....||::|.|..|                    .|.....:.|||.|..||.::        
Human   121 RSLYEHLQALLTPYEP--------------------DKSQGQDLQEQLAEGCRLAQH-------- 157

  Fly   635 ATLQSELVSKDEALEKFSLSECGIENLRRELELLKEENEKQAQEAQAEFTRKLAEKSVEVLRLSS 699
                  ||.|                      |..|.:|.:.::.|.|...|:.|.|..  |...
Human   158 ------LVQK----------------------LSPENDEDEDEDVQVEEAEKVLESSAP--REVQ 192

  Fly   700 ELQNLKATSDSLESERV---NKTDECEILQTEVRMRDEQIRELNQQLDEVTTQLNVQKADS--SA 759
            :.:..|...||||...:   |....|:..|....::      :..:.|||.:.|.|.:..|  ..
Human   193 KAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIK------ITFEEDEVNSTLVVDRESSHDEC 251

  Fly   760 LDDMLRLQKEGTEEKSTLL-----------EKTEKELVQSKEQAAKTLNDKEQLEKQISDLKQLA 813
            .|.:..|...|....:|.:           ||.|..:::        :|:|.:        .|||
Human   252 QDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILE--------INEKLR--------PQLA 300

  Fly   814 EQEKLVREMTENAINQIQLEKESIEQQLALKQNELEDFQKKQSESEVHLQEIKAQNTQKDFELVE 878
            |:::..|.:.|... ..||......||...|..|.:|..|....:|...:|              
Human   301 EKKQQFRNLKEKCF-LTQLSGFLANQQKKYKYEECKDLIKFMLRNERQFKE-------------- 350

  Fly   879 SGESLKKLQQQLEQKTLGHEKLQAALEELKKEKETIIKEKEQELQQLQSKSAESESALKVVQVQL 943
                 :||.:||:|           .|||::.| .::..:|:||.||:.|..|...|.:.:...|
Human   351 -----EKLAEQLKQ-----------AEELRQYK-VLVHAQERELTQLREKLREGRDASRSLNEHL 398

  Fly   944 EQLQQQAAASGEEGSKTVAK-LHDEISQLKSQAEETQSELKSTQSNLEAKSKQLEAANGSLEEEA 1007
                 ||..:.:|..|:..: |.:::::....|:....:|.....|.:.:..|:|.|     |:.
Human   399 -----QALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVA-----EKV 453

  Fly  1008 KKSGHLLEQITKLKSEVGETQAALSSCHTDVESKTKQLEAANAALEKVNKEYAESRAEASDLQ-- 1070
            :||           |...|.|            |.::.|....:||:....|:.|.......|  
Human   454 QKS-----------SAPREMQ------------KAEEKEVPEDSLEECAITYSNSHGSYDSNQPH 495

  Fly  1071 ---------DKVKE--ITDTLHAELQAERSSSSALHTKLSKFSDEIATGHKELTSKADAWSQEML 1124
                     |||..  |..:.|.|.:      .|:|......||:     :|...|.....:.:.
Human   496 RKTKITFEEDKVDSTLIGSSSHVEWE------DAVHIIPENESDD-----EEEEEKGPVSPRNLQ 549

  Fly  1125 QKEKELQELRQQLQDSQDSQTKLKAEGERKEKSFEESIKNLQEEVT------------KAKTENL 1177
            :.|:|  |:.|:..|...|...:..|.....:|:..:..:|:|:..            :.|.|:.
Human   550 ESEEE--EVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQ 612

  Fly  1178 ELSTGTQTTIKDLQER-------------------LEITNA-----------ELQ---------- 1202
            | :||.:.:.:.|.|:                   ||:|::           |.|          
Human   613 E-ATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDE 676

  Fly  1203 -HKEKMASED--------AQKIADLKTLVEAIQ----------------------VANANISATN 1236
             .|.:...||        ::::.|.|. .|.:|                      .::|..|...
Human   677 IEKYQEVEEDQDPSCPRLSRELLDEKE-PEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEE 740

  Fly  1237 AELSTVLEVLQAEKSE-------------TNHIFELFEMEADMNS-ERLIEKVTGIKEE------ 1281
            ..|...|:|.:.:|.|             :..:.|:.|.|...:| :|.....:...|:      
Human   741 QYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQP 805

  Fly  1282 -------LKETHL--QLDERQKKFEELEEKLKQAQQSEQKLQQESQTSKEKLTEIQ-----QSLQ 1332
                   |:|.|:  .||     ..|:|:|.|..::..::.::|.:..:::..|.|     :..:
Human   806 YGSSFYALEEKHVGFSLD-----VGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSR 865

  Fly  1333 ELQDSVKQKEELVQNLEEKVRESSSIIEAQNTKLNESNV--QLENKTSCLKETQDQLLESQKKEK 1395
            ||.|. |:.|.|..:|:......|..:|..:.....|:.  .||.:...|....|::.:.:::|:
Human   866 ELLDE-KEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEE 929

  Fly  1396 QLQEEAAKLSGELQQVQEANGDIKDSLVKVEELVK-----------------VLEEKLQAATSQL 1443
            .......:||.||.:|.|.. .::|||.:......                 .||||  .....|
Human   930 DQDPPCPRLSRELLEVVEPE-VLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEK--HVGFSL 991

  Fly  1444 DA----QQATNKELQELLVKSQENEGNLQGESLAVTEKLQQLEQANGELKEALCQKENGLKELQG 1504
            |.    ::...|:.:....|.:...|..:||.    ::.....:.:.||.:     |.|.:.||.
Human   992 DVGEIEKKGKGKKRRGRRSKKERRRGRKEGEE----DQNPPCPRLSRELLD-----EKGPEVLQD 1047

  Fly  1505 KLDESNT--------------------VLESQKKSHNEIQDKLEQAQQKERTLQEETSKLAEQLS 1549
            .||...:                    |||.|:.......|::|:.|:.|........:|:.:|.
Human  1048 SLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELL 1112

  Fly  1550 QLKQANEELQKSLQ--------------------------QKQLL--------LEKGNEFD---- 1576
            ..|:. |.||.||.                          ::|.|        ::|..|.:    
Human  1113 DEKEP-EVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQD 1176

  Fly  1577 ----------TQLAEYQKVIDEMDDAASVKSALLEQ-------------LQNR-------VAELE 1611
                      .::.|.:.:.|.:|...|..|:.|||             |:.:       |.|:|
Human  1177 PPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIE 1241

  Fly  1612 TALRQANDAQKTAYLETKELRRQLESLELEK-------SREVLSLKAQMNGASSRSGKGDEV--E 1667
               ::....::......||.||..:..|.::       |||:|            ..||.||  :
Human  1242 ---KKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELL------------DEKGPEVLQD 1291

  Fly  1668 SLD--IETSLAKINFLNSIIADMQQKNDALKAKVQTLETLPMDFTKPHAFDALTK-RKPA-PRLF 1728
            |||  ..|....:...:|    .|....|.....|....|.:|..:...:..:.: :.|: |||.
Human  1292 SLDRCYSTPSGCLELTDS----CQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLS 1352

  Fly  1729 CDICDEFDQHDTEDCPIQGSEDQDYSTPS---------------------------------SES 1760
            .::.||     .|...:|.|.|:.|||||                                 .:.
Human  1353 RELLDE-----KEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKD 1412

  Fly  1761 NNNEKERKLPAPRKYCDSCEVFGHDTSECADDETY 1795
            ...|:::..|.||...:..||...:..:.:.|..|
Human  1413 EEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCY 1447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CLIP-190NP_001368962.1 PHA03307 <2..>118 CDD:223039
CAP_GLY 125..189 CDD:396049
CAP_GLY 239..306 CDD:396049
SMC_prok_B <546..912 CDD:274008 80/398 (20%)
Smc 734..1591 CDD:224117 204/1091 (19%)
SHE3 1502..1702 CDD:293683 57/298 (19%)
CLIP1_ZNF 1773..1789 CDD:406934 3/15 (20%)
NBPF14NP_001382560.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

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