DRSC/TRiP Functional Genomics Resources

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Protein Alignment CLIP-190 and dnc-1

DIOPT Version :9

Sequence 1:NP_001368962.1 Gene:CLIP-190 / 35042 FlyBaseID:FBgn0020503 Length:1795 Species:Drosophila melanogaster
Sequence 2:NP_001255521.1 Gene:dnc-1 / 177987 WormBaseID:WBGene00001017 Length:1351 Species:Caenorhabditis elegans


Alignment Length:1481 Identity:317/1481 - (21%)
Similarity:566/1481 - (38%) Gaps:445/1481 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 VGDRVIVSSGFGSRPGILRYLGETQFAPGNWCGVELDEPSGKNDGTVDDIRYFECKPKYGVFVPI 303
            :|.||..|||.|.    :.:.|:||||.|:|.||.||..:|||:|||.:::||||:|.:||||..
 Worm     5 IGTRVKTSSGNGR----VVFCGQTQFAEGDWVGVILDTATGKNNGTVQNVQYFECEPNFGVFVKS 65

  Fly   304 AKVSLSPSSKKTRL-------------------------------SRTGSRESLTSIGTMNSIAT 337
            :.|.|..:||::.|                               |...|.|.||  |....:..
 Worm    66 SAVELEDASKRSGLKAPAASAIRKDSSVMSRSAGSKASPGSSPGMSPAASSEKLT--GRQTGMGP 128

  Fly   338 TATSRMRMNAQQRKSSTPVK------PILATPKSQFSMQDLLRE----KQQHVEKLMVERDLDR- 391
            .:.|::....::::|:||.|      |:  |.|:..|...::||    .|..|..........: 
 Worm   129 RSMSKLADPNEKKRSTTPQKARSPAPPM--TKKNSESTSRMVREFSNLSQSSVASSRASASASKP 191

  Fly   392 ------EDAQNQALQLQKNINEVIIFTDTMYAPLPYADRSRPYR---PSKKSRVKVPQQQHIWVP 447
                  .|.:.|:|...|.       ..|..||:.....|:|.:   |||.:.| .||:.   ||
 Worm   192 RPQFTAPDPRRQSLAPPKK-------ASTTTAPVSKPSLSKPRQSLAPSKPAEV-TPQKP---VP 245

  Fly   448 TTLSSSITTSTSTRPTIAAATAAAAAAAACNRQPL--QQQQQPHLHQKQQQAKPKKVWFCDKKKL 510
                               |..|:.|....|..||  ..:....|.::...::.||:  .|....
 Worm   246 -------------------AAQASEAGDPPNELPLPTMTESGTELPKESVLSRAKKI--DDTGPA 289

  Fly   511 FPL---------KARIVELESALDNERKKTEELQCSIDEAQFCGDELNAQSQVYKEKIHDLESKI 566
            .|:         :.|...:.|:......:.|.|:..:.|..   ::|.| ::|.:::.|   :|:
 Worm   290 APMSPLSTTAAARPRTTSVSSSAQESSTEIEYLRNQVKELT---EKLEA-ARVKRKEDH---TKV 347

  Fly   567 TKLVSATPSLQSILPPDLPSDDGALQEEI-AKLQEKMTIQQKEV-ESRIA-EQLEEEQRLRENVK 628
            .:|...:..|:|             .||: ::|.:|:|..:|:: :.||| |||:..|  .||..
 Worm   348 MELDRVSFELRS-------------SEEVRSRLIQKITELEKQIGDERIAKEQLQAWQ--DENKV 397

  Fly   629 YLNEQIATLQSELVSKDEALEK--------FSLSECGIENLRRELELLKEENEKQAQEAQAEFTR 685
            .|::...|::...:.|:.|.|:        .:|:| .:|::..|||:||||.......||     
 Worm   398 LLSDHQDTMEMATIEKELAEERADSLQNDVLTLTE-KLESMETELEILKEEMANGGGAAQ----- 456

  Fly   686 KLAEKSVEVLRLSSELQNLKATSDSLESERVNKTDECEILQTEVRMRDEQIRELNQQLDEVTTQL 750
              ...||::.::  |:||     |.|:...:                  ::|:||.|     ..|
 Worm   457 --VGNSVQMKQI--EIQN-----DKLKDALI------------------KLRDLNAQ-----ATL 489

  Fly   751 NVQKADSSALDDMLRLQKEGTEEKSTLLEKTEKELVQSKEQAAKTLNDKEQLEKQISDLKQLAEQ 815
            :.||    |:|:..||:.|.:|    |:...|....|::...:|....:||::..:.       .
 Worm   490 DRQK----AVDEAERLKTENSE----LIRVAENLKRQTEIAESKIAGFQEQIDAAMG-------A 539

  Fly   816 EKLVREMTENAINQ----IQLEK--------ESIEQQLA-LKQNELEDFQKKQSESEVHLQEIKA 867
            |.:|.::|:...|.    :|||:        ..:::||| :::.:::|..|:..:.::|:.|:..
 Worm   540 EAMVTQLTDKNFNMEERIMQLEETIEDMEEARDLDEQLAEVQKQQVKDLMKEIEQLKIHIHELNG 604

  Fly   868 QNTQKDFELVESGESLKKLQQQLEQKTLGHEKLQAALEELKKEKETIIKEKEQELQQLQSKSAES 932
            :...:....|:..:::.|.:          |::.....:::.:|:.::..:||....:   |.::
 Worm   605 RIRDEQKHAVDLSQTILKFR----------ERMANLNSQIQDQKDQVLSLEEQLHGHI---SVDN 656

  Fly   933 ESALKVVQVQL-------EQLQQQAAASGEEGSKTVAK-----LHDEISQLKSQAEETQSELKST 985
            :.|..|.|:|:       |.:::|..|...|.::..|.     |.|..|::  ..|.....|...
 Worm   657 DRASMVNQLQISANRNFAEDVERQVNAIEVEFARRQAGYLKAFLPDNFSRV--GGENDSILLVVM 719

  Fly   986 QSNLEAKSKQL---------EAANGSLEEEAKKSGHLLEQ-----------------ITKLKSEV 1024
            ...|.||:|..         :...|...|...|| |..||                 :.||:|.:
 Worm   720 LPRLAAKTKLFASLAAQCFPQVPGGMRREHVTKS-HKGEQWAHVARVNYLANSINAALGKLESAI 783

  Fly  1025 GETQAALSSCHTDVESKTKQLEAANAALEKVNKEYAE----SRAEASDLQDK------------- 1072
            |||.       .:|..|..:.....:..||...:|.|    ||.:.:...|.             
 Worm   784 GETT-------VEVLIKLTETYGEMSTHEKTVDQYLELLKKSRFDENTSLDSFVRPLVYFQNMFS 841

  Fly  1073 -------------VKEITDTLHAELQ-------------AERSSSSALHTKLSKFSDEIAT---- 1107
                         |.||..:|.|.|.             .|..::..::..|...:||.|.    
 Worm   842 LHIGGDGFNAAHWVSEICASLSAGLAYCRVNTQRISYFLQESITAGEVYNMLQTLNDEFAACESV 906

  Fly  1108 ---GHKELTSKADAWSQEMLQKEKELQE--LRQQLQDSQDSQTKLKAE----------GERKEKS 1157
               .::.|........|::|:.|.|..|  |...:|  .|....:..|          |..:.:.
 Worm   907 ILKAYRLLPGNVSGSEQKILKLESEFTEDLLNSVVQ--LDKMVSILQEVCANGALSFGGISETEG 969

  Fly  1158 FEESIKNLQEEVTK--AKTENLELSTGT----QTTIKDLQERLEITNAELQ-------------- 1202
            |:|  |.::|.:..  .|.:.......|    :..||.|::.||..|:.|:              
 Worm   970 FDE--KRVKEMINAVLGKQDGYIAIDKTFDPIRALIKSLRDSLEKVNSTLESAKMEHSAPEKKSF 1032

  Fly  1203 -------HKEKMASEDAQKIADLKTLVEAIQVANANISATNAELSTVLEVLQAEKSETNHIFELF 1260
                   |..|.|:::|:.:.                             .|.||.:.    |:.
 Worm  1033 PPLLDRAHHRKQAAQEAEGLR-----------------------------WQMEKKDN----EML 1064

  Fly  1261 EMEADMNSERLIEKVTGIKEELKETHLQLDERQK----KFEELEEKLKQAQQSEQKLQQESQTSK 1321
            |:...|.:.  ||.|:..|..|.....:|:...|    |.:.||||:.|.....::.|.|..   
 Worm  1065 ELRKQMKAR--IEDVSNYKLRLDMAESRLNSTDKAEGDKVKHLEEKINQMVADHRRKQIEYD--- 1124

  Fly  1322 EKLTEIQQSLQELQD---SVKQ------KEELVQNLEE-KVRESSSIIEAQNTKLNESN------ 1370
            |.:..:|:.::|::.   .:||      ||.|.:|::. :.|.|.|.....:|.::|..      
 Worm  1125 ESMDALQREMKEVESDNLELKQRANKISKEALWKNIQSMETRSSGSPSVPMSTSIDEGGASRGEV 1189

  Fly  1371 VQLENKTSCLKETQDQLLESQKKEKQLQEEAAKLSGELQQVQE---------ANGDIK-DSLVKV 1425
            |.|||          ||.:.....|:.:.|..||.|||.|...         .:|.|. :|..:.
 Worm  1190 VFLEN----------QLNKQTNARKRAELEVRKLKGELAQAGSKRFSAVPGLISGPITLESQTRQ 1244

  Fly  1426 EELVKVL----EEKLQAATSQLDAQQ--------ATNKELQELLVKSQENE 1464
            :.|:|::    :|.|:....:::.|.        :|.|.::|:.:.:.:.|
 Worm  1245 DLLLKLIDNLHDESLRLRREEVNHQAYVPSNPKISTEKMVEEMEIFNVKRE 1295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CLIP-190NP_001368962.1 PHA03307 <2..>118 CDD:223039
CAP_GLY 125..189 CDD:396049
CAP_GLY 239..306 CDD:396049 33/66 (50%)
SMC_prok_B <546..912 CDD:274008 83/389 (21%)
Smc 734..1591 CDD:224117 180/913 (20%)
SHE3 1502..1702 CDD:293683
CLIP1_ZNF 1773..1789 CDD:406934
dnc-1NP_001255521.1 CAP_GLY 5..68 CDD:366568 33/66 (50%)
PHA03247 <71..306 CDD:223021 51/270 (19%)
Smc <366..648 CDD:224117 75/346 (22%)
Dynactin 630..914 CDD:372121 55/296 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 71 1.000 Domainoid score I6145
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1398
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.030

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