DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CLIP-190 and npp-21

DIOPT Version :9

Sequence 1:NP_001368962.1 Gene:CLIP-190 / 35042 FlyBaseID:FBgn0020503 Length:1795 Species:Drosophila melanogaster
Sequence 2:NP_001360024.1 Gene:npp-21 / 174232 WormBaseID:WBGene00019940 Length:1970 Species:Caenorhabditis elegans


Alignment Length:1590 Identity:332/1590 - (20%)
Similarity:652/1590 - (41%) Gaps:388/1590 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   481 PLQQQQQP-------HLHQKQQQAKPKKVWFCDKKKLFPLKARIVELESALDNERKKTEELQCSI 538
            |||..:||       ..:.:.::|:.|::.|...::|..::.|:   |....:..:..|||....
 Worm     6 PLQAPEQPVADADDEEANWEMEKAEMKRIEFNQNRELTDMRERV---EDVSRSNSRMLEELTRHA 67

  Fly   539 DEAQFCGDELNAQSQV------YKEKIHDLESKITKL-----------VSATPSLQSILPPDLPS 586
            .|.:   :.:|.|..:      ..:|..:||:.:::|           |:||...|:     ...
 Worm    68 AEIK---EHINRQRVLESTRNELTDKNLELETVVSRLKIEKEERDAAVVNATKLAQT-----AQV 124

  Fly   587 DDGALQEEIAKL-QEKMTIQ------QKEVESRIAEQ----------LEEEQRLRENVKYLNEQI 634
            :..||::||.|| .|:.:::      :||::....|:          .|.:..|.:.|...:.::
 Worm   125 ETFALKDEIKKLTNEQASLRHSKEALEKEIQGIQFERQKYATERSLHAESKTWLMQEVSERDNKV 189

  Fly   635 ATLQSELVSKD--------EALEKFSLSECGIENLRRELELLKEENE---KQAQEAQAEFTRKLA 688
            ::|:.||.:||        :.:::.:|....:|||..:|::||..|.   |:.:..:.....::|
 Worm   190 SSLRLELSNKDIQGANERLQYVQQINLLNSQVENLNEKLDMLKFTNADLIKRMENTELSKVSEIA 254

  Fly   689 EKSVEVLRLSSELQNLKATS------------DSLESERVNKTDECEILQTE------------- 728
            ....|: |..:|||.:..:|            |.||::.....:..::||..             
 Worm   255 NLEEEI-RCQTELQRVMKSSMEESKNAADLFKDQLEAQENVLVEVRKVLQEHQDEMERENLAHAD 318

  Fly   729 -VRMRDEQIRELNQQLDEVT--------TQLNVQKADSS----ALDDMLRLQKEGTEEKSTLLE- 779
             ::.|||::.:...:|.:||        .:|||.:.:.|    |..:.:|..:.|....|.:|| 
 Worm   319 AIKHRDEELAQTRAELVKVTEMMKSMSDVKLNVSEEELSELAPAAAETVRYLRGGQSLSSLVLEH 383

  Fly   780 -KTEKELVQSKEQAAKTLNDKEQLEKQISDLKQLAEQEKLVR--------------EMTENAINQ 829
             :...:|.:.:|......|..|:|.:.|...|.....:|:|.              ::.|:...|
 Worm   384 ARVRGKLTEVEEDNVNLRNTLEELLETIDQNKPQMISQKMVTDELFDKNNRFEKQLDLAESERRQ 448

  Fly   830 IQLEKESIEQQLALKQNELEDFQK-----KQSESEVHLQEIKAQNTQKDFELVESGESLKKLQQQ 889
            :..::::.::.||..:.|||.:|:     .:..:|: |..::.|:..:|....|..:  ::|.|.
 Worm   449 LLSQRDTAQRDLAYVRAELEKYQRDYEFVSKRNAEL-LYAVERQSRMQDPNWSEQAD--EQLFQN 510

  Fly   890 LEQKTLGHEKLQAALEELK-KEKETIIKEKEQELQQLQ-----SKSAESESALKVVQV------- 941
            :.|....:.:|::.:|..| ...:..|..:.:|:.||:     :|.:|:|...||.|.       
 Worm   511 IVQLQRRNVELESDIENAKASAAQAAINAQSEEMAQLRADLAVTKKSEAELKTKVEQTKAAFDSL 575

  Fly   942 --QLEQLQQQAAASGEEGSKTVAKLHDE------------ISQLKSQAEETQSELKSTQSNLEAK 992
              :.|..::....|........|:|..|            |.:|::|||:.:::....:.:||.:
 Worm   576 KERTEHFKELVRDSVTAAEARTARLRAEEAIAAKVVADATIERLRTQAEDYKADHLRREQDLEQR 640

  Fly   993 SKQLEAANGSLEEEAKKSGHLLE-QITKLKSEVGETQAALSSCHTDVESKTKQLEAANAALEK-- 1054
            .:..||...|:.|...|...:|: |.|...|...|.::||.. ..::..:.|::.|.||..|:  
 Worm   641 IRNTEANIASVTETNIKLNAMLDAQKTNTASMDQEFKSALKE-KENIFEELKKVTAVNAENEQRL 704

  Fly  1055 --VNKEYAESRAEASDLQDKVKEITDTLHAELQAERSSSSALHTKLSKFSDEIATGHKELTSKAD 1117
              :.::..|:..:|..|:.:|:.:.|    |||:.|:..::|     :|:   |.|.:.:     
 Worm   705 VDLGRQTLEAVEQAGSLRVRVRSLED----ELQSARTEINSL-----QFT---ANGQRNI----- 752

  Fly  1118 AWSQEMLQKEKELQELRQQLQDSQDSQTKLKAEGERKEKSFEESIKNLQEEVTKAKTENL-ELST 1181
                  |:||   :::|..:.:..:..::::|| .....:.:..:..|:.:..||.|..| :..|
 Worm   753 ------LEKE---EQVRMSVVEMANFLSRVEAE-RLTHANTQLDVLRLERDSLKASTTRLSDQLT 807

  Fly  1182 GTQTTIKDLQER----LEITNAELQHKEKMASEDAQKIADLKTLVEAI--QVANANISATN---- 1236
            .|:...|.:|:|    |||....|..||...:.|..::|||::.:.::  |...::.|...    
 Worm   808 HTKNESKLVQQRLEKELEIARQRLSEKETQVTRDEMELADLRSKLASMHSQYTGSDASGMTPDRL 872

  Fly  1237 ----AELSTVLEVLQAE---------KSET---------------NHIFE----LFEMEADMNSE 1269
                .:|.|..:.|::|         :|||               |.:.|    ..|....|..|
 Worm   873 KREYMQLKTRTQFLESELDDAKRKLLESETTQKRMDAEHAISASHNTVLEENLKQSEQMGVMEKE 937

  Fly  1270 RLIEKVTGIKEELKETHLQLDERQKKFEELEEKLKQAQQSEQKLQQESQTSKEKLTEIQQSLQEL 1334
            ||:.|....::..|:....|::.|||.:||..|     ..||....|.:|:     |:::.||..
 Worm   938 RLVAKAKCFEDRSKQLAESLEQNQKKLDELRSK-----NDEQLFAHERETN-----ELRRQLQVA 992

  Fly  1335 Q---DSVKQKEELVQNLEEKVRESSSIIEAQNTKLNESNVQLENKTSCLKETQDQLLESQKKEKQ 1396
            .   |.|:::.|:|.|         ::|..||.....|:. ||..|:.:::.:|::.|.:....:
 Worm   993 SLNLDGVRRELEVVNN---------NLISMQNEATRNSSA-LEQHTTIVRQFEDRITEIESANLR 1047

  Fly  1397 LQEE----AAKLSGELQQVQEANGDIKDSLVKVEELVKVLEEKLQAATSQLDAQQATNKE----- 1452
            ||.|    .|.|..|....:||           :::::..|..||..|.:|::.:..|::     
 Worm  1048 LQTELNNKCAALVAESTAKREA-----------DQMIEHAERLLQKKTEELNSIEEENRQKQAEY 1101

  Fly  1453 ---LQELLVKSQENEGNLQGE------------SLAVTEKLQQL----EQANGE----------- 1487
               |.:|.::.:....||..:            |.:..|.||.|    .|:..|           
 Worm  1102 DEKLAQLSLQYESLSANLTNQNTTMEVKVNTDGSSSTVENLQSLLQFVRQSKDEATSRAMTAEVE 1166

  Fly  1488 ---LKEALCQKENGLKELQGKLDE------SNTVLESQKKSHNEIQDKLEQAQQKERTLQEETSK 1543
               |:....:.|.|..||..|:.:      :.|....:|.|..|....|.........|.||.:|
 Worm  1167 MRRLRAETAEYERGRNELLRKIRDLETEKIATTAALVEKASLMEKIQALTDVHNINAKLTEEKTK 1231

  Fly  1544 LAEQLSQLKQANEELQKSLQQKQLLLEKGNEFDTQLAEYQKVIDEMDDAASVKSALLEQLQNRV- 1607
            |..||.|:::...:|:....:    |...||      |.:..|...|..|:.:...:|||:.|| 
 Worm  1232 LQAQLHQIQKEKADLENQRSR----LSASNE------EQKLKIASSDQEANQRKREIEQLKQRVQ 1286

  Fly  1608 ----------------AELETALRQANDAQKTA------YLETKEL--RRQLESLELEKSRE--- 1645
                            |:|.||.:::..|...|      :.:|::|  :.:.|:.||:|..|   
 Worm  1287 TNARGAASQPQLDQLKAQLATARQESAAATAKAKAAEDKFNQTRQLAIKYRNENTELKKLAEAPP 1351

  Fly  1646 ------VLSLKAQMNGASSR-SGKGDEVESLD--------IETSLAKINFLNSIIADMQQKNDAL 1695
                  ...||.|.:..::: :....|:|:|:        :|.||..   .|..|..::|:|..|
 Worm  1352 GEGDPCAARLKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLKN---TNDQINQLKQENLKL 1413

  Fly  1696 -----KAKVQTLETLPMDFTKP---HAFDALTKRKPAPRLFCDIC-------DEFDQ----HDTE 1741
                 .|::|::....:: :||   .|..:::..:..|....|..       :|.||    ..::
 Worm  1414 TENIRMAQLQSVSATDVE-SKPGPSSASKSVSSIRQTPTKVLDPLSSAAKQPNEPDQTTGLKTSQ 1477

  Fly  1742 DCPIQGSEDQDYS-TPSSESNNNEKERKLP 1770
            ..|...::...:: ||:|:...:..:|.:|
 Worm  1478 QPPSFAAKRPSFAPTPTSQQKVSPVKRPIP 1507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CLIP-190NP_001368962.1 PHA03307 <2..>118 CDD:223039
CAP_GLY 125..189 CDD:396049
CAP_GLY 239..306 CDD:396049
SMC_prok_B <546..912 CDD:274008 93/470 (20%)
Smc 734..1591 CDD:224117 216/1015 (21%)
SHE3 1502..1702 CDD:293683 57/253 (23%)
CLIP1_ZNF 1773..1789 CDD:406934
npp-21NP_001360024.1 Smc 25..814 CDD:224117 168/831 (20%)
Smc 542..1286 CDD:224117 179/812 (22%)
PTZ00449 <1424..1746 CDD:185628 14/85 (16%)
Atrophin-1 1446..>1586 CDD:367360 11/62 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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