DRSC/TRiP Functional Genomics Resources

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Protein Alignment CLIP-190 and LOC101885857

DIOPT Version :10

Sequence 1:NP_001368962.1 Gene:CLIP-190 / 35042 FlyBaseID:FBgn0020503 Length:1795 Species:Drosophila melanogaster
Sequence 2:XP_005172082.1 Gene:LOC101885857 / 101885857 -ID:- Length:863 Species:Danio rerio


Alignment Length:507 Identity:107/507 - (21%)
Similarity:182/507 - (35%) Gaps:161/507 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 TSPLAKSSPDRSRTVSPTASIRSSMLRSPGIGGKNGMAVGDRVIVSSGFGSRPGILRYLGETQFA 265
            ||.||:..  |..|..|.:|.|                :||||:|.:   ||.|:|:|.|...||
Zfish   434 TSSLAEDL--RHETSDPLSSFR----------------IGDRVVVCN---SRAGVLKYKGLAAFA 477

  Fly   266 PGNWCGVELDEPSGKNDGTVDDIRYFECKPKYGVFVPIAKVSLSPSSKKTRLSRTG------SRE 324
            .|.|.||.||:|.|.::||...::||.|:..:||.|....:.....|.    ..||      |.|
Zfish   478 TGFWAGVALDDPCGNHNGTFRGVKYFSCEKSHGVLVRAEDIHREHGSD----VETGVDEDPFSDE 538

  Fly   325 SLT----------SIGT---------MNSIATTATSRMRMNAQQRKSSTPVKPILATPKSQFSMQ 370
            .||          ::|.         .|...|.....:..:.::...:|.:.....:..|:.:::
Zfish   539 ELTCAKQDKLLKDTLGADGQKGCSHCFNRDETMPVDTIHRSQEETHEATSIGVRNLSHPSEMALK 603

  Fly   371 DLL------REKQQHVE-KLMVERDLDREDAQNQALQLQKNINEVIIFTDTMYAPLPYADRSRPY 428
            ...      .|.:.||: ||..:.|.|.||......:.|:                         
Zfish   604 RTTVKLYNNGENRCHVDAKLTEDLDKDEEDCAQDTKKRQR------------------------- 643

  Fly   429 RPSKKSRVKVPQ-QQHIWVPTTLSSSITTSTSTRPTIAAATAAAAAAAACNRQPLQQQQQPH--- 489
              .|.:.:.|.| :...::|..|.......|.|...|..|                    ||   
Zfish   644 --IKSTDIDVRQGEDGYFMPCVLEQWHQVQTETPAKIKVA--------------------PHEDS 686

  Fly   490 ------------LHQKQQQAKPKKVWFCDKKKLFPLKARIVELESALDNERKKTEEL--QCSIDE 540
                        |:.:..:         |...|:...:.:::     |:.||:..::  |.:.|.
Zfish   687 IVYRLVDASVEILYSQANE---------DTLDLYETPSYLLD-----DDSRKRYRQVIFQLTSDV 737

  Fly   541 A-QFCGDELNAQSQVYKEKIHDLESKITKLVSATPS-----------LQSILPPDLPSDDGALQE 593
            . :..||.|..:...  |.||| .|.::.|.|:|.|           :|.:|  :|..::..:.|
Zfish   738 LHEILGDLLWTKQST--ENIHD-PSVVSALRSSTVSVTFLKAVVRKEIQKLL--NLERNEQQMTE 797

  Fly   594 EIAKLQEKMTIQQKEVESRIAEQLEEEQRL-------RENVK-YLNEQIATL 637
            .:.||.:....::..|:..:.::|..|:|.       :..|| :|.|:|.:|
Zfish   798 MLQKLCKYWYAKRDRVDFILIQELHNEERRWLDYRTDQYTVKMHLTEEIFSL 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CLIP-190NP_001368962.1 PHA03307 <2..>118 CDD:223039
CAP_GLY 125..189 CDD:460154
CAP_GLY 239..306 CDD:460154 29/66 (44%)
SMC_prok_B <546..912 CDD:274008 27/111 (24%)
SMC_prok_B 743..1596 CDD:274008
COG4913 <1534..>1703 CDD:443941
CLIP1_ZNF 1726..1743 CDD:465212
CLIP1_ZNF 1773..1789 CDD:465212
LOC101885857XP_005172082.1 CAP_GLY 454..518 CDD:460154 29/66 (44%)
Blue background indicates that the domain is not in the aligned region.

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