DRSC/TRiP Functional Genomics Resources

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Protein Alignment CLIP-190 and clip4

DIOPT Version :10

Sequence 1:NP_001368962.1 Gene:CLIP-190 / 35042 FlyBaseID:FBgn0020503 Length:1795 Species:Drosophila melanogaster
Sequence 2:XP_031758026.1 Gene:clip4 / 100495216 XenbaseID:XB-GENE-922411 Length:714 Species:Xenopus tropicalis


Alignment Length:411 Identity:117/411 - (28%)
Similarity:171/411 - (41%) Gaps:130/411 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 IPQPSKMKAPSSFGSTGSVSKIGRPCCNHTTPKSGPPPREATSMSRESDDNLSSINSAYTDNSSA 114
            :|.|..|  |.......:|:|..:.......|.|....| .|...||:..::||:.:|       
 Frog   229 VPDPVDM--PLEMADAAAVAKEIKQILLDAIPLSCDLSR-VTPTGRETAPSISSLLAA------- 283

  Fly   115 VLTANTEQFIIGQRVWLGGTRPGQIAFIGDTHFAAGEWAGVVLDEPNGKNDGCVSGKRYFQCEPK 179
                   ...||.||.:.|.:.|.:.|.|.|.||:|:|||:.:||..|||||.:.|..||:|..|
 Frog   284 -------ALKIGDRVLIAGQKVGTLRFCGSTEFASGQWAGIEMDESEGKNDGSIGGVTYFKCPQK 341

  Fly   180 RGIFSRLTRLT-------TY--------------------------------------PLAGAQT 199
            .|||:.|::::       |:                                      ...|::.
 Frog   342 HGIFAPLSKISRASDSMRTFIKSAKSVASVRSQKPDLSRVTSKINTGLVPSKKSGLSDSFQGSEA 406

  Fly   200 PTSPLAK------SSPDRSRTVSPTASI--------------------------RSSML------ 226
            ..|..||      ||...|.|.|.::|:                          :||.|      
 Frog   407 SDSVTAKKAFYVGSSSLSSSTSSSSSSVETKPPLSNHLRHRGSNNRKISAPFRSKSSALRTNNGL 471

  Fly   227 --RSPGIGGKNGMAV----GDRVIVSSGFGSRPGILRYLGETQFAPGNWCGVELDEPSGKNDGTV 285
              |:|.:|.......    ||||:|   .|.|.|.:|:.|:|.||||.|||:|||:|.|||:|::
 Frog   472 KARAPSVGSLQHSPAEFHPGDRVLV---VGQRIGTVRFYGKTNFAPGFWCGIELDKPHGKNNGSI 533

  Fly   286 DDIRYFECKPKYGVFVPIAKVSLSPSSKKTRLSRTGSRESLTSI----------GTMNSIATTAT 340
            ..::||.|.||:|||.|.::|.        |:|  ||.:||:.|          |...|.::|:|
 Frog   534 SGVQYFTCPPKHGVFAPPSRVQ--------RVS--GSVDSLSEIPASKLNHSFPGFRRSYSSTST 588

  Fly   341 SRMRMNAQQRKS-STPVKPIL 360
            ...:..|.:|.| ..|.||.|
 Frog   589 RASQSEADRRHSLGRPKKPAL 609

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CLIP-190NP_001368962.1 PHA03307 <2..>118 CDD:223039 15/67 (22%)
CAP_GLY 125..189 CDD:460154 31/63 (49%)
CAP_GLY 239..306 CDD:460154 35/70 (50%)
SMC_prok_B <546..912 CDD:274008
SMC_prok_B 743..1596 CDD:274008
COG4913 <1534..>1703 CDD:443941
CLIP1_ZNF 1726..1743 CDD:465212
CLIP1_ZNF 1773..1789 CDD:465212
clip4XP_031758026.1 ANKYR <92..>227 CDD:440430
ANK repeat 111..148 CDD:293786
ANK repeat 155..186 CDD:293786
ANK repeat 188..219 CDD:293786
NIP100 285..>419 CDD:227569 36/133 (27%)
CAP_GLY 287..351 CDD:460154 31/63 (49%)
CAP_GLY 491..554 CDD:460154 35/65 (54%)
CAP_GLY 635..699 CDD:460154
Blue background indicates that the domain is not in the aligned region.

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