Sequence 1: | NP_001368962.1 | Gene: | CLIP-190 / 35042 | FlyBaseID: | FBgn0020503 | Length: | 1795 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_031755790.1 | Gene: | clip1 / 100124823 | XenbaseID: | XB-GENE-1012946 | Length: | 2377 | Species: | Xenopus tropicalis |
Alignment Length: | 2454 | Identity: | 597/2454 - (24%) |
---|---|---|---|
Similarity: | 1004/2454 - (40%) | Gaps: | 791/2454 - (32%) |
- Green bases have known domain annotations that are detailed below.
Fly 52 QPSKMKAPSSFGSTGSVSKIGRPCCNHTTPKSGPPPREATSMSRESDDNLSSINSAYTDNSSAVL 116
Fly 117 TANTEQFI----IGQRVWLGGTRPGQIAFIGDTHFAAGEWAGVVLDEPNGKNDGCVSGKRYFQCE 177
Fly 178 PKRGIFSRLTRLT------------TYPLAGAQTPTS-------------------PLAKSSPDR 211
Fly 212 SRTVSP--------TASIRSSMLRSPGI--GGKNGMAVGDRVIVSSGFGSRPGILRYLGETQFAP 266
Fly 267 GNWCGVELDEPSGKNDGTVDDIRYFECKPKYGVFVPIAKV------SLSPSSKKT---------- 315
Fly 316 ---RLSRTGSRESLTSIGTMNSIATTATSRMRMNAQQRKSSTPVKPILATPKSQFSMQDLLREKQ 377
Fly 378 QHVEKLMVERDLDREDAQNQALQLQKNINEVIIF--------------TDTMYAPLPYADRSR-- 426
Fly 427 ---------------PYRPSKKS---------------RVKVPQQQHIWVPT---TLSSSI-TTS 457
Fly 458 TSTRP-TIAAATAAAAAAAACNRQPLQQQQQPHLHQKQQQAKPKKVWFCDK------------KK 509
Fly 510 LFPLKARIV--------ELESALDNERKKTEE-LQCSIDEAQFCGDELNAQSQVYKEKIH----- 560
Fly 561 ----------DLESKITKLVSATPSLQSILPPDLPSDDGALQEEIAKLQEKMTIQQKEVESR--- 612
Fly 613 ----IAEQLEEEQRLRENVKYLNE----QIATLQSE--------LVSKDEALEKFSLSECGIENL 661
Fly 662 RRELELL----KEENE---------KQAQEAQAEF---TRKLAEKSVEVLRLSSELQNLKATSDS 710
Fly 711 LESERVNKTDECEILQTEVRMRDEQIRELNQQLDEVTTQLNVQKADSSALDDMLRLQKEG---TE 772
Fly 773 EKSTLLEKT--------------------------------EKELVQSKEQAAKTLNDKEQLEKQ 805
Fly 806 ISDLKQ-----LAEQEKLVREM--TENAINQIQLE-------KESIEQQLALKQNELE-DFQKKQ 855
Fly 856 SESEVHLQEIKAQ----------NTQKDFELVESGESL------------KKLQQQLEQKTLGHE 898
Fly 899 KLQAALEELKKEKETIIKEKEQELQQLQSKSAESESA----------LKVVQVQLEQLQQQAAA- 952
Fly 953 -SGEEG--------SKTVAKLHDEISQLKSQAEETQSELKSTQSNLEAKSKQLEAANGSLEE--- 1005
Fly 1006 ----EAKKSGHLL----EQITKLKSEVGETQAALSSCHTDVESKTKQLEAANAALEKVNKEYAES 1062
Fly 1063 RAEASDLQ-----------------------------DKVKEITDTLHAELQAERSSSSALHTKL 1098
Fly 1099 S--------------KFSDEIATGHKELTSKADAWSQ--EMLQKEKE------------------ 1129
Fly 1130 -LQELRQQ---LQDSQDSQTKLKAEGERKEKSFEE---------------------SIKNLQEEV 1169
Fly 1170 TKAKTENL-----------ELSTG-------------------TQTT-----------IKDLQER 1193
Fly 1194 LEITNAELQHKEKMASEDAQKIADL----KTLVEAIQVANANISATNAELSTVLEVLQAEKSETN 1254
Fly 1255 --HIFELFEMEADMNSER-----------LIEKVTGI-KEELKETHLQLDERQKKFE-------- 1297
Fly 1298 ------ELEEKLKQAQQ-----------------------------------SEQKLQQESQTSK 1321
Fly 1322 EKLTEIQQSLQE----LQDSVKQKEELVQNLEEKVRESSSIIEAQNTKLNESNVQLE-------N 1375
Fly 1376 KTSCLKETQDQLLESQKK-------EKQLQEEAAKLSGELQQVQEANGDI--------------- 1418
Fly 1419 ---KDSLVKVEELVKVLE-------------EKLQA-------------------ATSQLDAQ-- 1446
Fly 1447 ---------------QATNKELQEL------LVKSQEN--EGN----------------LQGESL 1472
Fly 1473 AVTE-------------------------------KLQQLEQANGELKEALCQ------------ 1494
Fly 1495 ----------KE------NGLKELQGKLD--------ESNTV-----------------LESQKK 1518
Fly 1519 SHNEIQDKLEQAQQKERTLQEETSKLAEQLSQLKQ---ANEEL--QKSLQQKQLLLEKGN----- 1573
Fly 1574 --------EFDTQLAEYQKVIDEMDDAASVKSALLEQLQNRVAELETALRQANDAQKTAYLETKE 1630
Fly 1631 LRRQLESLELEK-----SREVLSLKAQMNGASSRSGKGDEVESLDIE-TSL-AKINFLNSIIADM 1688
Fly 1689 QQKNDALKAKVQTLETLPMDFTKPHAFD-------ALTKRKPAPRLFCDICDEFDQHDTEDCPIQ 1746
Fly 1747 GSEDQDYSTPSSESNNNEKERKLPAPRKYCDSCEVFGHDTSECADDETY 1795 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CLIP-190 | NP_001368962.1 | PHA03307 | <2..>118 | CDD:223039 | 13/65 (20%) |
CAP_GLY | 125..189 | CDD:396049 | 38/63 (60%) | ||
CAP_GLY | 239..306 | CDD:396049 | 42/66 (64%) | ||
SMC_prok_B | <546..912 | CDD:274008 | 101/487 (21%) | ||
Smc | 734..1591 | CDD:224117 | 280/1366 (20%) | ||
SHE3 | 1502..1702 | CDD:293683 | 76/249 (31%) | ||
CLIP1_ZNF | 1773..1789 | CDD:406934 | 11/15 (73%) | ||
clip1 | XP_031755790.1 | NIP100 | 57..>195 | CDD:227569 | 52/137 (38%) |
CAP_GLY | 57..121 | CDD:396049 | 38/63 (60%) | ||
CAP_GLY | 212..276 | CDD:396049 | 42/66 (64%) | ||
SMC_prok_B | <344..641 | CDD:274008 | 62/307 (20%) | ||
Smc | 506..1322 | CDD:224117 | 174/846 (21%) | ||
Smc | 944..1742 | CDD:224117 | 168/813 (21%) | ||
SMC_prok_B | 1393..2224 | CDD:274008 | 174/839 (21%) | ||
CLIP1_ZNF | 2355..2371 | CDD:406934 | 11/15 (73%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 227 | 1.000 | Domainoid score | I2453 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 401 | 1.000 | Inparanoid score | I1879 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1110101at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0002895 | |
OrthoInspector | 1 | 1.000 | - | - | otm47534 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR18916 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X2251 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
9 | 9.070 |