DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CLIP-190 and clip1

DIOPT Version :9

Sequence 1:NP_001368962.1 Gene:CLIP-190 / 35042 FlyBaseID:FBgn0020503 Length:1795 Species:Drosophila melanogaster
Sequence 2:XP_031755790.1 Gene:clip1 / 100124823 XenbaseID:XB-GENE-1012946 Length:2377 Species:Xenopus tropicalis


Alignment Length:2454 Identity:597/2454 - (24%)
Similarity:1004/2454 - (40%) Gaps:791/2454 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 QPSKMKAPSSFGSTGSVSKIGRPCCNHTTPKSGPPPREATSMSRESDDNLSSINSAYTDNSSAVL 116
            :||.:|||         |:|.:|               .|:.::.|.....::.:|....|:|. 
 Frog     5 KPSGLKAP---------SRIAKP---------------GTAAAKSSAVTAPTVKTAEKPASTAP- 44

  Fly   117 TANTEQFI----IGQRVWLGGTRPGQIAFIGDTHFAAGEWAGVVLDEPNGKNDGCVSGKRYFQCE 177
            :...|:|:    :|::||:.|.:||.|.|:|:|.||.|:|||:||||..|||||.|:|.||||||
 Frog    45 SETAEEFVDDFRVGEKVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEVIGKNDGAVAGVRYFQCE 109

  Fly   178 PKRGIFSRLTRLT------------TYPLAGAQTPTS-------------------PLAKSSPDR 211
            ..||||:|.::|:            |.|::.|.:|||                   ||..|:|..
 Frog   110 ALRGIFTRPSKLSRKPLEEESNGTQTAPISRATSPTSLSCTNVSPVVTTAPTSALTPLKTSTPPA 174

  Fly   212 SRTVSP--------TASIRSSMLRSPGI--GGKNGMAVGDRVIVSSGFGSRPGILRYLGETQFAP 266
            ..:.:|        |.|...|.|...|.  .|:..:.:||||:||   ||:.|::|:||||.||.
 Frog   175 KESSTPAQLSNLTRTTSESISNLSETGSVKKGERELKLGDRVLVS---GSKAGVIRFLGETDFAK 236

  Fly   267 GNWCGVELDEPSGKNDGTVDDIRYFECKPKYGVFVPIAKV------SLSPSSKKT---------- 315
            |.|||||||||.|||||.|...|||:|:||||:|.|:.||      |.:|:..||          
 Frog   237 GEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTRIGFPSTTPAKAKTSVRKIATTPA 301

  Fly   316 ---RLSRTGSRESLTSIGTMNSIATTATSRMRMNAQQRKSSTPVKPILATPKSQFSMQDLLREKQ 377
               .|.|:.|..|::|:.:::|..:...||..:..:  .||...:.|..|.    ::|:.|:|||
 Frog   302 TPASLKRSPSASSISSLSSISSSVSNKPSRTGLLTE--TSSRYARKISGTT----ALQEALKEKQ 360

  Fly   378 QHVEKLMVERDLDREDAQNQALQLQKNINEVIIF--------------TDTMYAPLPYADRSR-- 426
            ||:|:|:.|||::|.:......|:.:...|:.:.              .|.:.|.:..|||.:  
 Frog   361 QHIEQLLAERDMERAEVAKATSQVGEVEQELAVIRHGHDQYVVEMEAKMDQLRALVEAADREKVE 425

  Fly   427 ---------------PYRPSKKS---------------RVKVPQQQHIWVPT---TLSSSI-TTS 457
                           .:|..::|               |:|..:|..::..|   .|...: .|.
 Frog   426 LLNQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARIKELEQSLLFEKTKADKLQRELEDTR 490

  Fly   458 TSTRP-TIAAATAAAAAAAACNRQPLQQQQQPHLHQKQQQAKPKKVWFCDK------------KK 509
            ..||| ::..||.:..:      :.:..::...|..|:.....:::..|||            ::
 Frog   491 AKTRPVSLKVATVSEKS------RIMDLEKDLSLKTKEVVDLRQRLLQCDKQAGNVDTSLSLLQE 549

  Fly   510 LFPLKARIV--------ELESALDNERKKTEE-LQCSIDEAQFCGDELNAQSQVYKEKIH----- 560
            :..|:.||.        |||| |.|:.|.||| .:..:...:...::::.:::..|.|::     
 Frog   550 VNSLQERIATISKEHNHELES-LKNKLKNTEENHEKDLGALKMSTEKISKENETLKVKLNHANKE 613

  Fly   561 ----------DLESKITKLVSATPSLQSILPPDLPSDDGALQEEIAKLQEKMTIQQKEVESR--- 612
                      .|||.||....|...|.........:::.||.|..|:::......|||:|.:   
 Frog   614 NSDVIELWKSKLESAITSHQKAMEELTLSFSKGNSAENSALIELKAQIENVKIEHQKEMERQKGA 678

  Fly   613 ----IAEQLEEEQRLRENVKYLNE----QIATLQSE--------LVSKDEALEKFSLSECGIENL 661
                :|..|::.:.|:..::..||    ::.|::|:        |:..::.|.|...||..:   
 Frog   679 QDTDLAGYLKQIEELKAKLQEFNEEKEMELETMKSKLETAEEQHLIEMEDTLNKLHESEIKV--- 740

  Fly   662 RRELELL----KEENE---------KQAQEAQAEF---TRKLAEKSVEVLRLSSELQNLKATSDS 710
             :|||:|    ||::|         |.|::....|   .:..:|..:|::|....|:..:....|
 Frog   741 -KELEVLQGKCKEQSETIDRLTTQMKSAEDTLVNFDSVQKAESEGKMEIMRYQENLKAAEVKIKS 804

  Fly   711 LESERVNKTDECEILQTEVRMRDEQIRELNQQLDEVTTQLNVQKADSSALDDMLRLQKEG---TE 772
            ||:|...:|.:...|..|: :..:::..|::|  ::::.:.::::....::|:    |:|   :.
 Frog   805 LEAENSAETSKANDLAKEL-LEQKEMLSLSEQ--KISSFVQIKESWEKEMEDL----KKGLNNSS 862

  Fly   773 EKSTLLEKT--------------------------------EKELVQSKEQAAKTLNDKEQLEKQ 805
            |.:.|:.||                                ||.|.:|:|:....|:.|.:||||
 Frog   863 ENANLVTKTLQETVNKLEQKEKQYEEISKKLDILKPRCVSLEKMLKESEEKEQNFLSTKTKLEKQ 927

  Fly   806 ISDLKQ-----LAEQEKLVREM--TENAINQIQLE-------KESIEQQLALKQNELE-DFQKKQ 855
            ||::.|     .|:..||..|:  .|..::.::||       ...:|:::||.|:|.| :.:|.|
 Frog   928 ISEMIQSSGDSSAQLTKLNEELQSRERNLDDLRLELSKARDLVHELEEKIALMQSEAERNNEKAQ 992

  Fly   856 SESEVHLQEIKAQ----------NTQKDFELVESGESL------------KKLQQQLEQKTLGHE 898
            ...:..:::|.:|          |..::.||.||...:            ..|:|.:::|....:
 Frog   993 KSHQEEVEKIASQIGDLKLKIEKNQTENKELQESHNKIMVDLDVQHQALVTTLKQSIQEKEELWK 1057

  Fly   899 KLQAALEELKKEKETIIKEKEQELQQLQSKSAESESA----------LKVVQVQLEQLQQQAAA- 952
            ..||.:.::|.:.|.:    :||.:|::|.:...||.          ::|::::.::|.|:.:. 
 Frog  1058 TAQATISDMKGQMEDL----KQEAEQIKSLTCVLESTRNEFELISEEMRVLKLERDKLAQETSTL 1118

  Fly   953 -SGEEG--------SKTVAKLHDEISQLKSQAEETQSELKSTQSNLEAKSKQLEAANGSLEE--- 1005
             .|||.        ..::..|..|.:||.|..|    |||...::|..|.|:||..|.||.:   
 Frog  1119 KQGEESLHLKHLEYESSIKTLQQEQNQLFSMNE----ELKLENNSLLIKMKELENKNCSLNDGNE 1179

  Fly  1006 ----EAKKSGHLL----EQITKLKSEVGETQAALSSCHTDVESKTKQLEAANAALEKVNKEYAES 1062
                :.:|..:.|    :::.|:..:..:.|||::....|:    |:|:.:...|...|::....
 Frog  1180 TLASDKEKLCYELDNAKQELLKVTMDNEDLQAAVAKMDADL----KELQRSRDLLVTQNEDLQNQ 1240

  Fly  1063 RAEASDLQ-----------------------------DKVKEITDTLHAELQAERSSSSALHTKL 1098
            :.|..|.|                             :|.|.:||.: :.||.|:.|:...|.:|
 Frog  1241 KLELQDYQKTQTEEKITLAREKDEIIEMLKNTGEEMLNKHKHLTDEI-SSLQIEKESAVGKHLEL 1304

  Fly  1099 S--------------KFSDEIATGHKELTSKADAWSQ--EMLQKEKE------------------ 1129
            .              |.:.||....:.|..|.:..:.  |.|.:|||                  
 Frog  1305 ESNLNALISERDNLLKATTEIKIEREGLMLKQNELNTLIENLHQEKEKLALERNSKEEELIAVTS 1369

  Fly  1130 -LQELRQQ---LQDSQDSQTKLKAEGERKEKSFEE---------------------SIKNLQEEV 1169
             |::|.|:   |.:|:|:.|.:.|..||:::..||                     ::|..||| 
 Frog  1370 QLEKLLQENAALLNSKDALTLMCAAVEREKQQLEECQHQLIDEKMLLAKEKDDIIKALKESQEE- 1433

  Fly  1170 TKAKTENL-----------ELSTG-------------------TQTT-----------IKDLQER 1193
            |..:.:||           |:.||                   .:||           :||.:..
 Frog  1434 TSTEQKNLVNELAGLRSENEIITGKLIQHENRVSVLVKEQEELMKTTKELSSQRDELLLKDKESN 1498

  Fly  1194 LEITNAELQHKEKMASEDAQKIADL----KTLVEAIQVANANISATNAELSTVLEVLQAEKSETN 1254
            |.|::. ||.||::..:.::..|:|    |.||::.: .|..:..:...|..:||.::..:|.|:
 Frog  1499 LRISDL-LQEKEQINHKFSELTAELSSFKKQLVKSTK-DNEELKNSKETLCNLLEEIKTSRSVTD 1561

  Fly  1255 --HIFELFEMEADMNSER-----------LIEKVTGI-KEELKETHLQLDERQKKFE-------- 1297
              .:..|.|.|....|:|           .||::|.| |..|::..|..:|.:::..        
 Frog  1562 SERVSLLQEKEEMSASQRKLLAEKDDLLKQIEEITTISKVSLEQAILCQNEMKEEINNIKNDKIL 1626

  Fly  1298 ------ELEEKLKQAQQ-----------------------------------SEQKLQQESQTSK 1321
                  |||.|||...:                                   |...|.||.::..
 Frog  1627 ISAQLVELENKLKSVSEKRSVLRENNNELLSKEQSLIKELIDLKNEYEILNSSNSSLAQEKKSLT 1691

  Fly  1322 EKLTEIQQSLQE----LQDSVKQKEELVQNLEEKVRESSSIIEAQNTKLNESNVQLE-------N 1375
            |:|..:...:.|    :.:..|.||.:.::||:.::|.|.:.....:.|.|.|..:|       |
 Frog  1692 EELASLNVRINETAKCVDELTKMKENISESLEQTLKEKSDLESEITSILQEKNSLMEDYKKCCLN 1756

  Fly  1376 KTSCLKETQDQLLESQKK-------EKQLQEEAAKLSGELQQVQEANGDI--------------- 1418
            |...||:..:..::.|:.       |::|.||....:.|.:.:...|.|:               
 Frog  1757 KEMVLKDKDELQIKFQELHIGYKGFEQRLTEERETFANEKESLLLKNEDLQKILDMVTEEKEQAL 1821

  Fly  1419 ---KDSLVKVEELVKVLE-------------EKLQA-------------------ATSQLDAQ-- 1446
               |:.|.:..:||:..|             |.|||                   ..|:||.|  
 Frog  1822 LMHKEVLTEQHKLVEQKENIENNMHTLSRENESLQAKNQFHLSNIKELQSNVESLTKSKLDLQDS 1886

  Fly  1447 ---------------QATNKELQEL------LVKSQEN--EGN----------------LQGESL 1472
                           :|.|.||:.|      |:.:|||  ..|                |..||:
 Frog  1887 YNSILKTLEDLRCVHEAKNAELENLVREKCELILAQENLMASNRSILKEKETLAKDCEKLSEESV 1951

  Fly  1473 AVTE-------------------------------KLQQLEQANGELKEALCQ------------ 1494
            .:|:                               |||.|.......|:.:||            
 Frog  1952 ILTKKNDEVSAKTQQLSNQCQALLNEKEELLEKCNKLQTLHNTTEAKKDEVCQMAEESLQIVEKI 2016

  Fly  1495 ----------KE------NGLKELQGKLD--------ESNTV-----------------LESQKK 1518
                      ||      :.||.|..||.        |.|||                 .|:.:|
 Frog  2017 TAEKNKLVKEKEESVNAMDSLKMLNQKLQNDLKDLSKEHNTVSEENTRNVELVKSECLKTETLRK 2081

  Fly  1519 SHNEIQDKLEQAQQKERTLQEETSKLAEQLSQLKQ---ANEEL--QKSLQQKQLLLEKGN----- 1573
            ...|::...||..|:...||||..||||:|.:.|:   .|::|  ::|:...|||..|.:     
 Frog  2082 EMEELRLLAEQKSQQLAALQEENLKLAEELGKSKEEVTTNQKLEEERSVLNNQLLEMKKSLPSNT 2146

  Fly  1574 --------EFDTQLAEYQKVIDEMDDAASVKSALLEQLQNRVAELETALRQANDAQKTAYLETKE 1630
                    ||:.:.|..||.:.....:.:.|...||:|:|.|||    ||:.|::.::.....:.
 Frog  2147 IRESLRKKEFNEEKASLQKSLSATSASITEKDKELERLRNEVAE----LREKNESARSLQSAVRS 2207

  Fly  1631 LRRQLESLELEK-----SREVLSLKAQMNGASSRSGKGDEVESLDIE-TSL-AKINFLNSIIADM 1688
            |  :.|.:.|||     .:|:...|.|:|..|:.||..........| ||| ::|:||||:|.|:
 Frog  2208 L--ESEKINLEKRVKNLEKELNDNKRQLNNVSNSSGDSSFSSQFQEEKTSLESQIDFLNSVIIDL 2270

  Fly  1689 QQKNDALKAKVQTLETLPMDFTKPHAFD-------ALTKRKPAPRLFCDICDEFDQHDTEDCPIQ 1746
            |:|||.||.|::.:....::.......|       ..:|:|..|||||||||.||.|||||||.|
 Frog  2271 QRKNDELKLKIEKMIEASLNGNNEEEMDNRDSLNGTQSKKKVPPRLFCDICDCFDLHDTEDCPTQ 2335

  Fly  1747 GSEDQDYSTPSSESNNNEKERKLPAPRKYCDSCEVFGHDTSECADDETY 1795
             ::..| |.|.|..:.:.||.     |.|||.||||||.|:.|.||||:
 Frog  2336 -TQLPD-SPPHSNFHGSRKEE-----RPYCDICEVFGHWTNSCNDDETF 2377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CLIP-190NP_001368962.1 PHA03307 <2..>118 CDD:223039 13/65 (20%)
CAP_GLY 125..189 CDD:396049 38/63 (60%)
CAP_GLY 239..306 CDD:396049 42/66 (64%)
SMC_prok_B <546..912 CDD:274008 101/487 (21%)
Smc 734..1591 CDD:224117 280/1366 (20%)
SHE3 1502..1702 CDD:293683 76/249 (31%)
CLIP1_ZNF 1773..1789 CDD:406934 11/15 (73%)
clip1XP_031755790.1 NIP100 57..>195 CDD:227569 52/137 (38%)
CAP_GLY 57..121 CDD:396049 38/63 (60%)
CAP_GLY 212..276 CDD:396049 42/66 (64%)
SMC_prok_B <344..641 CDD:274008 62/307 (20%)
Smc 506..1322 CDD:224117 174/846 (21%)
Smc 944..1742 CDD:224117 168/813 (21%)
SMC_prok_B 1393..2224 CDD:274008 174/839 (21%)
CLIP1_ZNF 2355..2371 CDD:406934 11/15 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 227 1.000 Domainoid score I2453
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 401 1.000 Inparanoid score I1879
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1110101at2759
OrthoFinder 1 1.000 - - FOG0002895
OrthoInspector 1 1.000 - - otm47534
Panther 1 1.100 - - LDO PTHR18916
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2251
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.070

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