DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrch and Lrch3

DIOPT Version :10

Sequence 1:NP_609834.2 Gene:Lrch / 35041 FlyBaseID:FBgn0032633 Length:1135 Species:Drosophila melanogaster
Sequence 2:NP_001297603.1 Gene:Lrch3 / 70144 MGIID:1917394 Length:796 Species:Mus musculus


Alignment Length:839 Identity:284/839 - (33%)
Similarity:397/839 - (47%) Gaps:192/839 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAATVYQRLHSVAVGVGSAAGSAIGSGSASLPGSGTGSGSGIGHAGNTSSSTSSALLSHSQLTRS 65
            :||..|.  ..||.| |:.:|:..|......||.|.||.|                       ||
Mouse    10 VAAAEYS--GPVASG-GNLSGATCGPSPGLGPGPGPGSWS-----------------------RS 48

  Fly    66 LERILEEAHFSGELILTNRKLKDFPRTGTKYSLTDTVIADLSRNRFAELPEEVTTFAFLETLLLY 130
            ::|.||||..:|.|.|:.|||::|||....:.||||..|||||||.:|:|.|...|..||:|.||
Mouse    49 VDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPMEACHFVSLESLNLY 113

  Fly   131 HNTIRSIPESVKQLSSLTYLDLRSNQLSSLPREICFLPLQVLLVSNNRLTSLPDELGRLDQTLTD 195
            .|.||.|||:|..|.:||:|::..||||:||..:|.|||:||:.|||:|.|||:|:|.| :.||:
Mouse   114 QNCIRYIPEAVLNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHL-RHLTE 177

  Fly   196 LDASYNQLANLPARLGELRSLRSLSLRSNHLLYLPRELTCLSLISLDVSNNKIASLPLEIRHMST 260
            ||.|.|::..:|:::|.|.:||..::|.||||.||.||..:.||.||.|.|||..:|:..|::..
Mouse   178 LDVSCNEIQTVPSQIGNLEALRDFNVRRNHLLRLPEELAEVPLIRLDFSCNKITVIPVCYRNLRH 242

  Fly   261 LVELQLENNPLTSPPASLCMRGLVHVFKFLETQATKDEKGSRSGGNYDGYTTLRRAP-------R 318
            |..:.|:||||.||||.:|::|.:|:||:|..||.|                  .||       |
Mouse   243 LQVITLDNNPLQSPPAQICIKGKIHIFKYLNIQACK------------------IAPDLPDYERR 289

  Fly   319 HNSSGNVLEASTTGSTNNQRRHQVDSGYNTSDGLDKRWSHDAPTKSKTDSPLHCVSNSTAATLPR 383
            ....|:..|...:|....    .:|||:|:.|..|||||.:.||...:|.||.....:....|.|
Mouse   290 PLGFGSCHEELYSGRPYG----ALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRR 350

  Fly   384 -------------TLPSAVH--SQADLMDASLT------------------SSTSTIVDESLTLS 415
                         |.....|  .|.|.:|:..|                  ||......|...:|
Mouse   351 ESQYQENRSSVAVTNGGVEHDLDQIDYIDSCTTEEEENDVKQPKSLDTNSLSSQFMAYIEQRRIS 415

  Fly   416 PTASPCK-------------LSYAHSN-----SSSNGSSPDQDDDIMLDHQERTVHHANGRS--- 459
            ...||.|             ..|:|.|     .|...|.|...:  .|.|.:..:|....:|   
Mouse   416 HEVSPVKPIAVREFQKTEDMKRYSHQNRVPVEPSLVLSMPPSHN--QLSHSDLELHQRREQSIEC 478

  Fly   460 ---GKGLGNIQTYKEYKEALKQ-QRNQEISVYKQKHPNANHSPNDDEDLSPSPPSISNGSSSNTL 520
               ...|..:| |:|.|...|| ||:..:...|||   |:|:|...:     ||  .||..|  .
Mouse   479 TRREAQLAALQ-YEEEKIRTKQIQRDAVLDFVKQK---ASHNPQRQQ-----PP--GNGECS--F 530

  Fly   521 PKSIMKQNSNQIGHNGNGNGSANGNGVDDV-VIPKKPIQKVIPSRITEIKPASTSDIRSA----- 579
            |       |.:..|..:.....:.:|:|.| .:..:|..    |..|.:|..:..|:.|:     
Mouse   531 P-------SRRSQHTDDSALLVSLSGLDGVSCVATRPHS----SAFTPLKSENRVDVTSSFPMTE 584

  Fly   580 --NSSDCLGY---------VKPQSPMKNGTSKFNTSNGGGVQTTVGIVSSTTIKSPVSSTTKLGT 633
              :.|....:         .:|:|.:.....:...:.|   :.:..::||.....|..:.|    
Mouse   585 TVHHSPAYSFPAATQRNQPQRPESFLFRAAVRAEANKG---RASPLLLSSAPATDPTDAIT---- 642

  Fly   634 VKTHRSVTWNHDIPAEKLSFTMRREFDRQR-EETELMSQLRTIIETRLKMTLPVDIASALTDGVI 697
                                       ||| ||.:|:.|||..||.|||::||.|:.:||||||:
Mouse   643 ---------------------------RQREEELKLIDQLRKHIEYRLKVSLPCDLGAALTDGVV 680

  Fly   698 LCHLANYVRPRSVASIHVPSPGVNKLTMARCRRNVDNFLEACRRIGVDEELICSCEDVV 756
            ||||||:||||||.|||||||.|.|||||:|||||:|||:|||:|||.::.:||..|::
Mouse   681 LCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLDACRKIGVPQDNLCSPSDIL 739

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrchNP_609834.2 LRR <81..>286 CDD:443914 102/204 (50%)
leucine-rich repeat 124..146 CDD:275380 13/21 (62%)
leucine-rich repeat 147..167 CDD:275380 10/19 (53%)
leucine-rich repeat 169..192 CDD:275380 13/22 (59%)
leucine-rich repeat 193..215 CDD:275380 9/21 (43%)
leucine-rich repeat 216..237 CDD:275380 11/20 (55%)
leucine-rich repeat 238..260 CDD:275380 10/21 (48%)
leucine-rich repeat 261..279 CDD:275380 10/17 (59%)
CH_LRCH 667..755 CDD:409054 59/87 (68%)
CH_SF <1075..1099 CDD:469584
Lrch3NP_001297603.1 leucine-rich repeat 61..83 CDD:275380 9/21 (43%)
LRR <80..>286 CDD:443914 104/224 (46%)
leucine-rich repeat 84..106 CDD:275380 12/21 (57%)
leucine-rich repeat 107..129 CDD:275380 13/21 (62%)
leucine-rich repeat 130..145 CDD:275380 8/14 (57%)
leucine-rich repeat 152..174 CDD:275380 13/22 (59%)
leucine-rich repeat 175..197 CDD:275380 9/21 (43%)
leucine-rich repeat 198..218 CDD:275380 11/19 (58%)
leucine-rich repeat 220..242 CDD:275380 10/21 (48%)
leucine-rich repeat 243..261 CDD:275380 10/17 (59%)
COG5022 <329..>501 CDD:227355 36/174 (21%)
CH_SF 647..756 CDD:469584 62/93 (67%)
Blue background indicates that the domain is not in the aligned region.

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