DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lrch and Pidd1

DIOPT Version :10

Sequence 1:NP_609834.2 Gene:Lrch / 35041 FlyBaseID:FBgn0032633 Length:1135 Species:Drosophila melanogaster
Sequence 2:NP_073145.1 Gene:Pidd1 / 57913 MGIID:1889507 Length:915 Species:Mus musculus


Alignment Length:180 Identity:71/180 - (39%)
Similarity:103/180 - (57%) Gaps:13/180 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 DLSRNRFAELPEEVTTFAFLETLLLYHNTIRSIPESVKQLSSLTYLDLRSNQLSSLPREICFL-P 168
            |||.||...||..|.....|:.|||.||.:..:||::..|.:||:|.:..|:|..||..:..| .
Mouse   136 DLSFNRLETLPTCVPELHGLDALLLSHNHLSELPEALGALPALTFLTVTHNRLERLPLTLGSLST 200

  Fly   169 LQVLLVSNNRLTSLPDELGRLDQTLTDLDASYNQLANLPARLGELRSLRSLSLRSNHLLYLPREL 233
            ||.|.:|.|.|.::|.|:|.| ::|::|:.:.|:|.:|||.|..|||||.|.|.||.|..:|..|
Mouse   201 LQRLDLSENLLDTIPSEIGNL-RSLSELNLASNRLQSLPASLAGLRSLRLLVLHSNLLTSVPTGL 264

  Fly   234 TCLSLIS-LDVSNNKIASLPLEIRHMSTLVELQLENNPL-------TSPP 275
            ..|.||: ||:.:|::..||.|:.....   ::|:.|||       .|||
Mouse   265 VHLPLITRLDLRDNRLRDLPAELLDAPF---VRLQGNPLGEASPAPPSPP 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrchNP_609834.2 LRR <81..>286 CDD:443914 71/180 (39%)
leucine-rich repeat 124..146 CDD:275380 9/21 (43%)
leucine-rich repeat 147..167 CDD:275380 7/19 (37%)
leucine-rich repeat 169..192 CDD:275380 10/22 (45%)
leucine-rich repeat 193..215 CDD:275380 9/21 (43%)
leucine-rich repeat 216..237 CDD:275380 9/20 (45%)
leucine-rich repeat 238..260 CDD:275380 8/22 (36%)
leucine-rich repeat 261..279 CDD:275380 7/22 (32%)
CH_LRCH 667..755 CDD:409054
CH_SF <1075..1099 CDD:469584
Pidd1NP_073145.1 LRR <125..>300 CDD:443914 66/167 (40%)
LRR 1 131..152 8/15 (53%)
leucine-rich repeat 132..154 CDD:275380 8/17 (47%)
LRR 2 154..176 8/21 (38%)
leucine-rich repeat 155..177 CDD:275380 9/21 (43%)
LRR 3 177..199 7/21 (33%)
leucine-rich repeat 178..200 CDD:275380 8/21 (38%)
LRR 4 200..221 9/20 (45%)
leucine-rich repeat 201..223 CDD:275380 10/22 (45%)
LRR 5 223..245 8/21 (38%)
leucine-rich repeat 224..246 CDD:275380 9/21 (43%)
LRR 6 246..268 10/21 (48%)
leucine-rich repeat 247..269 CDD:275380 10/21 (48%)
LRR 7 269..290 8/20 (40%)
leucine-rich repeat 270..289 CDD:275380 7/18 (39%)
ZU5 330..>403 CDD:470600
Peptidase_S68 426..458 CDD:463098
Peptidase S68. /evidence=ECO:0000255|PROSITE-ProRule:PRU00485 428..457
ZU5 469..542 CDD:470600
Peptidase S68. /evidence=ECO:0000255|PROSITE-ProRule:PRU00485 571..599
UPA domain. /evidence=ECO:0000250 585..721
DD 793..878 CDD:472698
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 888..915
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.