DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrch and lrch1

DIOPT Version :9

Sequence 1:NP_609834.2 Gene:Lrch / 35041 FlyBaseID:FBgn0032633 Length:1135 Species:Drosophila melanogaster
Sequence 2:XP_021334626.1 Gene:lrch1 / 560885 ZFINID:ZDB-GENE-030131-1783 Length:786 Species:Danio rerio


Alignment Length:793 Identity:264/793 - (33%)
Similarity:382/793 - (48%) Gaps:166/793 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 ASLPGSGTGSG-SGIGHAGNTSSSTSSALLSHSQLTRSLERILEEAHFSGELILTNRKLKDFPRT 92
            :.||.:...:. ||:|.:.|.            .|.|.|||.||:|..||.|.|:.||||:||||
Zfish    12 SQLPSAALQTNLSGLGSSTNL------------PLNRGLERALEDAANSGFLNLSTRKLKEFPRT 64

  Fly    93 GTKYSLTDTVIADLSRNRFAELPEEVTTFAFLETLLLYHNTIRSIPESVKQLSSLTYLDLRSNQL 157
            .:.|.|||||.||||:||..::|.||.....||||.||||.|:|||:::..|.|||.|::..|||
Zfish    65 ASNYDLTDTVEADLSKNRLIDVPSEVCHLVSLETLNLYHNCIKSIPDTIISLQSLTCLNISRNQL 129

  Fly   158 SSLPREICFLPLQVLLVSNNRLTSLPDELGRLDQTLTDLDASYNQLANLPARLGELRSLRSLSLR 222
            |.||..:|.|||:||..|||:|.:||:.:|:| ..|.:||.|.|::..||.::.:|:|||.|::.
Zfish   130 SVLPACVCGLPLRVLNASNNKLNALPESIGQL-TNLMELDVSCNEITALPRQIVQLKSLRELNVH 193

  Fly   223 SNHLLYLPRELTCLSLISLDVSNNKIASLPLEIRHMSTLVELQLENNPLTSPPASLCMRGLVHVF 287
            .|.|..||.:|..|.|:..|...||::::|:..|.|:.|..||||||||.||||.:||:|.:|:|
Zfish   194 RNLLCVLPEDLADLPLVKFDFCCNKVSTIPVCYRKMTQLQSLQLENNPLQSPPAQICMKGKIHIF 258

  Fly   288 KFLETQATKDEKGSRSGGNYDGYTTLRRAPRHNSSGNVLEASTTGSTNNQRRHQ---VDSGYNTS 349
            |:|..:|.:.:|  .:...|...|......|          .:.|||.:..:|:   .|||..:.
Zfish   259 KYLAMEACRSDK--MADALYLPVTDRLSLTR----------PSNGSTEDIDQHKKLDSDSGVGSD 311

  Fly   350 DGLDKRWSHDAPTKSKTDSPLHCVSNSTAATLPRTLPSAVHSQADLMDASLTSSTSTIVDES--- 411
            :| |||.|...|:.          .:|.:..:|.|              ::|.......|:|   
Zfish   312 NG-DKRLSATEPSD----------EDSLSLNVPMT--------------NITEEEGLSKDDSSEH 351

  Fly   412 ---LTLSPTASPC---KLSYAHSNSSS------NGSSPDQDDDIMLDHQERTVHHANGRSGKGLG 464
               ||...::|..   .|||..|..||      .|...|.|:.:.::.....|.....:      
Zfish   352 ISGLTGDRSSSESLKDHLSYRDSALSSPFVNYIKGRGADFDEPLRIEEDTNWVSEQTAK------ 410

  Fly   465 NIQTYKEYKEALKQQRNQEISVYKQKHPN-ANHSPNDDEDLSPSPPSI------SNGSSSN---T 519
             :....:.|||::..::          || .|.:..|...:...|..:      .||..|:   .
Zfish   411 -VNMINQLKEAVEMLQD----------PNRVNMNSADLSGIKLYPVEMVAVDDSLNGQESDEGQA 464

  Fly   520 LPKS-------------------------------IMKQNSNQIGHNGNGNGSANGNGVDDVVIP 553
            .||:                               .|.|..:.||..|.|:...|...:::   .
Zfish   465 TPKAPGECWEFQRKRQFILERARLEAQLACQQYALHMAQQGDVIGQEGAGDSCENQITMNE---E 526

  Fly   554 KKPIQK-VIPSRITEIKPASTSDIRSANSSDCLGYVKP----QSPMKNGTSKFNTSNGGGVQTTV 613
            |.|:.. .:.|....:||.|.|.....::..|     |    |:|..:..:..:.:.|       
Zfish   527 KTPVSSPTLNSPPFGLKPRSASPSVPCSTPPC-----PLPLTQAPPTDRDTPPSPAEG------- 579

  Fly   614 GIVSSTTIKSPVSSTTKLGTVKTHRSVTWNHDIPAEKLSFTMRREFDRQREETELMSQLRTIIET 678
                      .:.|:....|.||..||.     |    .|||||:.::.|||.||..|||..||:
Zfish   580 ----------DMPSSVFFRTHKTLESVD-----P----QFTMRRKMEQLREELELTEQLRESIES 625

  Fly   679 RLKMTLPVDIASALTDGVILCHLANYVRPRSVASIHVPSPGVNKLTMARCRRNVDNFLEACRRIG 743
            |||:.||.|:..:|:|||:||||.|::|||||.|||||||.|.||:||:|||||:|||:|||::|
Zfish   626 RLKVVLPEDLGCSLSDGVVLCHLVNHIRPRSVGSIHVPSPAVPKLSMAKCRRNVENFLDACRKMG 690

  Fly   744 VDEELICSCEDVV 756
            |.|..:||..||:
Zfish   691 VPESSLCSAYDVL 703

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrchNP_609834.2 LRR_8 124..179 CDD:290566 32/54 (59%)
LRR_4 124..161 CDD:289563 21/36 (58%)
leucine-rich repeat 124..146 CDD:275380 13/21 (62%)
leucine-rich repeat 147..167 CDD:275380 10/19 (53%)
leucine-rich repeat 169..192 CDD:275380 11/22 (50%)
leucine-rich repeat 193..215 CDD:275380 8/21 (38%)
leucine-rich repeat 216..237 CDD:275380 8/20 (40%)
leucine-rich repeat 238..260 CDD:275380 7/21 (33%)
leucine-rich repeat 261..279 CDD:275380 13/17 (76%)
CH 676..756 CDD:214479 51/79 (65%)
lrch1XP_021334626.1 leucine-rich repeat 23..47 CDD:275380 12/35 (34%)
NEL <46..>204 CDD:330839 80/158 (51%)
leucine-rich repeat 51..72 CDD:275380 12/20 (60%)
leucine-rich repeat 73..95 CDD:275380 11/21 (52%)
leucine-rich repeat 96..118 CDD:275380 13/21 (62%)
leucine-rich repeat 119..134 CDD:275380 8/14 (57%)
leucine-rich repeat 141..163 CDD:275380 11/22 (50%)
leucine-rich repeat 164..186 CDD:275380 8/21 (38%)
leucine-rich repeat 187..207 CDD:275380 8/19 (42%)
leucine-rich repeat 209..231 CDD:275380 7/21 (33%)
leucine-rich repeat 232..250 CDD:275380 13/17 (76%)
CH 614..717 CDD:214479 57/90 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 120 1.000 Domainoid score I5709
eggNOG 1 0.900 - - E2759_KOG0532
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 386 1.000 Inparanoid score I1979
OMA 1 1.010 - - QHG46074
OrthoDB 1 1.010 - - D186976at33208
OrthoFinder 1 1.000 - - FOG0000912
OrthoInspector 1 1.000 - - otm25931
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3681
SonicParanoid 1 1.000 - - X454
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.870

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