DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrch and Lrch4

DIOPT Version :10

Sequence 1:NP_609834.2 Gene:Lrch / 35041 FlyBaseID:FBgn0032633 Length:1135 Species:Drosophila melanogaster
Sequence 2:XP_038945505.1 Gene:Lrch4 / 360779 RGDID:1306145 Length:695 Species:Rattus norvegicus


Alignment Length:800 Identity:253/800 - (31%)
Similarity:352/800 - (44%) Gaps:204/800 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAATVYQRLHSVAVGVGSAAGSAIGSGSASLPGSGTGSGSGIGHAGNTSSSTSSALLSHSQLTRS 65
            |||.|...|   |.|...||.|....||..||||                             ||
  Rat     1 MAAAVAGPL---AAGGEEAAASVSVPGSPGLPGS-----------------------------RS 33

  Fly    66 LERILEEAHFSGELILTNRKLKDFPRTGTK-YSLTDTVIA---------DLSRNRFAELPEEVTT 120
            .||.||||..:|.|.|:||:||.|||...: |.|:|...|         |||||||.|:||....
  Rat    34 AERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQAAPSGPLLSLDLSRNRFPEVPEAACQ 98

  Fly   121 FAFLETLLLYHNTIRSIPESVKQLSSLTYLDLRSNQLSSLPREICFLPLQVLLVSNNRLTSLPDE 185
            ...||.|.||||.:|.:..::..|::||||:|..|||||||..||.|||:||::|||:|.:||.:
  Rat    99 LVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLIISNNKLGALPPD 163

  Fly   186 LGRLDQTLTDLDASYNQLANLPARLGELRSLRSLSLRSNHLLYLPRELTCLSLISLDVSNNKIAS 250
            :..|. :|..||.|.|:|.:||..|..|||||.|::|.|.|..||.||..|.|:.||.|.|:::.
  Rat   164 ISTLG-SLRQLDVSSNELQSLPVELCSLRSLRDLNVRRNQLSTLPDELGDLPLVRLDFSCNRVSR 227

  Fly   251 LPL---EIRHMSTLVELQLENNPLTSPPASLCMRGLVHVFKFLETQATK------DEKGSR---- 302
            :|:   .:||:..::   |::|||.||||.:|::|.:|:||:|..:|.:      |...||    
  Rat   228 IPVSFCRLRHLQVIL---LDSNPLQSPPAQICLKGKLHIFKYLTMEAGRRGAALGDLVPSRPPSF 289

  Fly   303 ---------SGGNYDGYTTLRRAPRHNSSGNVLEASTTGSTNNQRRHQVDSGYNTSDGLDKRWSH 358
                     .|..|||                               .:|||:::.|...||||.
  Rat   290 SPCPAEDLFPGRRYDG-------------------------------GLDSGFHSVDSGSKRWSG 323

  Fly   359 DAPTKSKTDSPLHCVSNSTAATLPR--TLPSAVHS------QADLMDASLTSSTSTIVDESLTLS 415
            :..|...::.....   |..|..||  ..|....|      |.|.:|:.:.........|..|..
  Rat   324 NESTDDFSELSFRI---SELAREPRGPRQPREDGSGDGDLEQIDFIDSHVPGDDEQSAAEVRTQE 385

  Fly   416 PTASPCKLSYAHSN----SSSNGSSPDQDDDIMLDHQERTVHHANGRSGKGLGNIQTYKEYKEAL 476
            |.  |.:||.|..:    |||....|..::....|    |:|              .::|.:..|
  Rat   386 PL--PSELSLAAGDMERPSSSRREEPAGEERRRPD----TLH--------------LWQERERRL 430

  Fly   477 KQQRNQEISVYKQKHPNANHSPNDDEDLSPSPPSISNGSSSNTLPKSIMKQNSNQIGHNGNGNGS 541
            :||........|...|............:||..:..||.     |||    ::.|:|.:|.....
  Rat   431 QQQSGAWGPSKKDSIPKRGIRATGAGASAPSTQTACNGP-----PKS----SAAQLGVSGEQGAP 486

  Fly   542 ANGNGVDDVVIPKKPIQKVIPSRITEIKPASTSDIRSANSSDCLGYVKPQSPMKNGTSKFNTSNG 606
            ...:...|.:....|:...:|..:..|:..::...||::.|              |:|       
  Rat   487 TLPSTSQDPLPVSGPVTAPVPRPLGSIQRPNSFLFRSSSQS--------------GSS------- 530

  Fly   607 GGVQTTVGIVSSTTIKSPVSSTTKLGTVKTHRSVTWNHDIPAEKLSFTMRREFDRQREETELMSQ 671
                                                    |:...|....|.|.:..||.||:||
  Rat   531 ----------------------------------------PSSPESVLRPRPFPQILEEKELISQ 555

  Fly   672 LRTIIETRLKMTLPVDIASALTDGVILCHLANYVRPRSVASIHVPSPGVNKLTMARCRRNVDNFL 736
            ||.|:|:||:..||.|:|.||.:|||||.|||.:|||||..||||||.|.||:..:.|:||:|||
  Rat   556 LRQILESRLQQPLPEDLAEALANGVILCQLANQLRPRSVPFIHVPSPAVPKLSALKSRKNVENFL 620

  Fly   737 EACRRIGVDEELICSCEDVV 756
            ||||::||.|..:||..|::
  Rat   621 EACRKMGVPEADLCSPSDLL 640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrchNP_609834.2 LRR <81..>286 CDD:443914 98/217 (45%)
leucine-rich repeat 124..146 CDD:275380 9/21 (43%)
leucine-rich repeat 147..167 CDD:275380 14/19 (74%)
leucine-rich repeat 169..192 CDD:275380 10/22 (45%)
leucine-rich repeat 193..215 CDD:275380 10/21 (48%)
leucine-rich repeat 216..237 CDD:275380 10/20 (50%)
leucine-rich repeat 238..260 CDD:275380 8/24 (33%)
leucine-rich repeat 261..279 CDD:275380 8/17 (47%)
CH_LRCH 667..755 CDD:409054 53/87 (61%)
CH_SF <1075..1099 CDD:469584
Lrch4XP_038945505.1 leucine-rich repeat 46..72 CDD:275380 12/25 (48%)
LRR <66..>250 CDD:443914 83/187 (44%)
leucine-rich repeat 79..101 CDD:275380 10/21 (48%)
leucine-rich repeat 102..124 CDD:275380 9/21 (43%)
leucine-rich repeat 125..144 CDD:275380 13/18 (72%)
leucine-rich repeat 147..169 CDD:275380 10/22 (45%)
leucine-rich repeat 170..192 CDD:275380 10/21 (48%)
leucine-rich repeat 193..213 CDD:275380 10/19 (53%)
leucine-rich repeat 215..237 CDD:275380 6/21 (29%)
PHA03247 <280..507 CDD:223021 57/289 (20%)
CH_LRCH4 548..654 CDD:409122 56/92 (61%)
Blue background indicates that the domain is not in the aligned region.

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