DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrch and ics

DIOPT Version :10

Sequence 1:NP_609834.2 Gene:Lrch / 35041 FlyBaseID:FBgn0032633 Length:1135 Species:Drosophila melanogaster
Sequence 2:NP_609665.2 Gene:ics / 34774 FlyBaseID:FBgn0028546 Length:283 Species:Drosophila melanogaster


Alignment Length:224 Identity:73/224 - (32%)
Similarity:109/224 - (48%) Gaps:32/224 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 IADLSRNRFAELPEEVTTFAFLETLLLYHNTIRSIPESVKQLSSLTYLDLRSNQLSSLPREICFL 167
            :||...:.|.||| .:...:.:..|.|.||.|..|...:..|.:|..|:|.:|||:.||..:..:
  Fly    32 LADKGLSSFEELP-GLFNMSNITRLTLSHNKISVISPGIANLLNLEILNLSNNQLTELPVSLSSM 95

  Fly   168 P-LQVLLVSNNRLTSLPDELGRLDQTLTDLDASYNQLAN-------------------------L 206
            | |::|.||.|||.:||...|.. ..|..||.|||.|..                         :
  Fly    96 PKLRILNVSINRLINLPRGFGAF-PVLEVLDLSYNNLNEQVLPGNFFGMETLRALYLGDNDFEYI 159

  Fly   207 PARLGELRSLRSLSLRSNHLLYLPREL-TCLSLISLDVSNNKIASLPLEIRHMSTLVE---LQLE 267
            |..:|:|::|:.|.||.|.||.||||: ..:.|..|.:.||::..||.||..:..|..   :::|
  Fly   160 PKEVGQLKNLQILGLRDNDLLELPREVGDLVRLRELHIQNNRLQVLPPEIAQLDLLSNKSVMKME 224

  Fly   268 NNPLTSPPASLCMRGLVHVFKFLETQATK 296
            .||..:|.|...:.|:.||..:|:|:..|
  Fly   225 ENPWVNPIAEQYLLGISHVIDYLKTETYK 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrchNP_609834.2 LRR <81..>286 CDD:443914 68/212 (32%)
leucine-rich repeat 124..146 CDD:275380 7/21 (33%)
leucine-rich repeat 147..167 CDD:275380 8/19 (42%)
leucine-rich repeat 169..192 CDD:275380 10/22 (45%)
leucine-rich repeat 193..215 CDD:275380 10/46 (22%)
leucine-rich repeat 216..237 CDD:275380 11/21 (52%)
leucine-rich repeat 238..260 CDD:275380 8/21 (38%)
leucine-rich repeat 261..279 CDD:275380 6/20 (30%)
CH_LRCH 667..755 CDD:409054
CH_SF <1075..1099 CDD:469584
icsNP_609665.2 leucine-rich repeat 29..51 CDD:275380 6/19 (32%)
LRR <31..>208 CDD:443914 59/177 (33%)
leucine-rich repeat 52..84 CDD:275380 10/31 (32%)
leucine-rich repeat 98..120 CDD:275380 10/22 (45%)
leucine-rich repeat 121..145 CDD:275380 7/23 (30%)
leucine-rich repeat 146..168 CDD:275380 3/21 (14%)
leucine-rich repeat 169..191 CDD:275380 11/21 (52%)
Blue background indicates that the domain is not in the aligned region.

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