DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lrch and Lrch4

DIOPT Version :9

Sequence 1:NP_609834.2 Gene:Lrch / 35041 FlyBaseID:FBgn0032633 Length:1135 Species:Drosophila melanogaster
Sequence 2:NP_666276.1 Gene:Lrch4 / 231798 MGIID:1917193 Length:680 Species:Mus musculus


Alignment Length:786 Identity:244/786 - (31%)
Similarity:345/786 - (43%) Gaps:202/786 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 SVAVGVGSAAGSAIGSGSASLPGSGTGSGSGIGHAGNTSSSTSSALLSHSQLTRSLERILEEAHF 75
            :.||....|||....:.|.|||||....||                       ||.||.||||..
Mouse     2 AAAVAGPLAAGGEEAAASVSLPGSPGLPGS-----------------------RSAERALEEAVA 43

  Fly    76 SGELILTNRKLKDFPRTGTK-YSLTDTVIADLSRNRFAELPEEVTTFAFLETLLLYHNTIRSIPE 139
            :|.|.|:||:||.|||...: |.|:|...||||||||.|:||.......||.|.||||.::.:..
Mouse    44 TGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLKCLNP 108

  Fly   140 SVKQLSSLTYLDLRSNQLSSLPREICFLPLQVLLVSNNRLTSLPDELGRLDQTLTDLDASYNQLA 204
            ::..|::||||:|..|||||||..||.|||:||::|||:|.:||.::..|. :|..||.|.|:|.
Mouse   109 ALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLIISNNKLGALPPDISTLG-SLRQLDVSSNELQ 172

  Fly   205 NLPARLGELRSLRSLSLRSNHLLYLPRELTCLSLISLDVSNNKIASLPL---EIRHMSTLVELQL 266
            :||..|..|||||.|::|.|.|..||.||..|.|:.||.|.|:|:.:|:   .:||:..::   |
Mouse   173 SLPVELCSLRSLRDLNVRRNQLSTLPDELGDLPLVRLDFSCNRISRIPVSFCRLRHLQVVL---L 234

  Fly   267 ENNPLTSPPASLCMRGLVHVFKFLETQATK------DEKGSR-------------SGGNYDGYTT 312
            ::|||.||||.:|::|.:|:||:|..:|.:      |...||             .|..|||   
Mouse   235 DSNPLQSPPAQICLKGKLHIFKYLTMEAGRRGAALGDLVPSRPPSFSPCPAEDLFPGRRYDG--- 296

  Fly   313 LRRAPRHNSSGNVLEASTTGSTNNQRRHQVDSGYNTSDGLDKRWSHDAPTKSKTDSPLHCVSNST 377
                                        .:|||:::.|...||||.:..|...::........:.
Mouse   297 ----------------------------GLDSGFHSVDSGSKRWSGNESTDDFSELSFRISELAR 333

  Fly   378 AATLPRTLPSAVHSQADLMDASLTSSTSTIVDESLTLSPTASPCKLSYAHSN----SSSNGSSPD 438
            ....||..........||.......|.....||..:.:....|.:||....:    |||....| 
Mouse   334 DPRGPRQPREDGAGDGDLEQIDFIDSHVPGEDEDRSAAEEQLPSELSLVAGDVEKPSSSRREEP- 397

  Fly   439 QDDDIMLDHQERTVHHANGRSGKGLGNIQTYKEYKEALKQQRNQEISVYKQKHPNANHSPNDDED 503
                             .|...:....:|.::|      ::|.|      |:......||..|..
Mouse   398 -----------------AGEERRRPDTLQLWQE------RERKQ------QQQSGGWGSPRKDSV 433

  Fly   504 L------------SPSPPSISNGSSSNTLPKSIMKQNSNQIGHNGNGNGSANGNGVDDVVIP-KK 555
            |            :||..:..||.     |||    ::.|:|.:| |.|:..........:| ..
Mouse   434 LKRGIRAAGAGASAPSTQATCNGP-----PKS----STTQLGVSG-GQGAPTPPPTSQDPLPVSG 488

  Fly   556 PIQKVIPSRITEIKPASTSDIRSANSSDCLGYVKPQSPMKNGTSKFNTSNGGGVQTTVGIVSSTT 620
            |:...:|..:..|:..::...||::.|..    .|.||                           
Mouse   489 PVTAPVPRPLGSIQRPNSFLFRSSSQSGS----SPSSP--------------------------- 522

  Fly   621 IKSPVSSTTKLGTVKTHRSVTWNHDIPAEKLSFTMRREFDRQREETELMSQLRTIIETRLKMTLP 685
                             .||......|.||                ||:||||.::|:||:..||
Mouse   523 -----------------ESVLRPRPFPQEK----------------ELISQLRQVLESRLQQPLP 554

  Fly   686 VDIASALTDGVILCHLANYVRPRSVASIHVPSPGVNKLTMARCRRNVDNFLEACRRIGVDEELIC 750
            .|:|.||.:||:||.|||.:|||||..||||||.|.||:..:.|:||::||||||::||.|..:|
Mouse   555 EDLAEALANGVLLCQLANQLRPRSVPFIHVPSPAVPKLSALKSRKNVESFLEACRKMGVPEADLC 619

  Fly   751 SCEDVV 756
            |..|::
Mouse   620 SPSDLL 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrchNP_609834.2 LRR_8 124..179 CDD:290566 30/54 (56%)
LRR_4 124..161 CDD:289563 18/36 (50%)
leucine-rich repeat 124..146 CDD:275380 8/21 (38%)
leucine-rich repeat 147..167 CDD:275380 14/19 (74%)
leucine-rich repeat 169..192 CDD:275380 10/22 (45%)
leucine-rich repeat 193..215 CDD:275380 10/21 (48%)
leucine-rich repeat 216..237 CDD:275380 10/20 (50%)
leucine-rich repeat 238..260 CDD:275380 9/24 (38%)
leucine-rich repeat 261..279 CDD:275380 8/17 (47%)
CH 676..756 CDD:214479 45/79 (57%)
Lrch4NP_666276.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..35 15/55 (27%)
LRR 1 43..64 10/20 (50%)
leucine-rich repeat 46..69 CDD:275380 11/22 (50%)
LRR 2 69..90 12/20 (60%)
leucine-rich repeat 70..92 CDD:275380 11/21 (52%)
LRR_8 92..148 CDD:290566 30/55 (55%)
LRR_4 92..131 CDD:289563 19/38 (50%)
LRR 3 92..114 7/21 (33%)
leucine-rich repeat 93..115 CDD:275380 8/21 (38%)
LRR_RI <103..>245 CDD:238064 66/145 (46%)
LRR 4 115..136 14/20 (70%)
leucine-rich repeat 116..131 CDD:275380 11/14 (79%)
LRR 5 137..158 10/20 (50%)
LRR_8 138..194 CDD:290566 27/56 (48%)
leucine-rich repeat 138..160 CDD:275380 10/22 (45%)
LRR 6 160..182 9/21 (43%)
leucine-rich repeat 161..183 CDD:275380 10/21 (48%)
LRR_8 182..239 CDD:290566 24/59 (41%)
LRR 7 183..205 11/21 (52%)
leucine-rich repeat 184..204 CDD:275380 10/19 (53%)
leucine-rich repeat 206..228 CDD:275380 7/21 (33%)
LRR 8 206..226 7/19 (37%)
LRR 9 228..249 10/23 (43%)
leucine-rich repeat 229..247 CDD:275380 8/20 (40%)
Dishevelled 265..405 CDD:280528 31/188 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 329..528 48/286 (17%)
CH 532..624 CDD:278723 53/107 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 65 1.000 Domainoid score I10001
eggNOG 1 0.900 - - E2759_KOG0532
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 395 1.000 Inparanoid score I1953
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46074
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000912
OrthoInspector 1 1.000 - - otm43627
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X454
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.830

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