Protein Alignment CG12288 and SNP1

DIOPT Version :10

• Sequence 1: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Sequence 2: NP_012203.1
• Gene: SNP1 / 854749
• SGDID: S000001323
• Length: 300
• Species: Saccharomyces cerevisiae
• Alignment Length: 271
• Identity: 63/271 - (23%)
• Similarity: 111/271 - (40%)
• Gaps: 65/271 - (23%)

  Fly   215 PEIAQQALALNGS------EFKE----NHL---------RVTPASMAEK----FGQAKDKQPSDK 256
            |.|...|..|:.|      ||.|    |||         ::..|.:.::    :....|....|.
Yeast    39 PNITGVANLLSTSLKHYMEEFPEGSPNNHLQRYEDIKLSKIKNAQLLDRRLQNWNPNVDPHIKDT 103

  Fly   257 DAKRTIFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDG-DKGCKGVAYVCFQKPDAV------- 313
            |..||||:|.|.|...|.:|::.|...|||:.||.::|. .:..||.|::.|:.|.:.
Yeast   104 DPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEI 168

  Fly   314 ----GLALELNQTLLD-DRPINVERYQVKKLG------AKQVRDAAAASAASKTSSKTKAKNQNS 367
                |:.::....::| :|...|:.::.::||      ....||:......:..|:...|: :|.
Yeast   169 GVHRGIQIKDRICIVDIERGRTVKYFKPRRLGGGLGGRGYSNRDSRLPGRFASASTSNPAE-RNY 232

  Fly   368 AGAKKRLDKKKGKENG-SLKKEGAPTGQKKKSEYRG-----------VKVDGIKKAKKPKKKSND 420
            |   .||.:::...:. |..:.|:.|   ..:.|||           ..|..:.|:    :.|..
Yeast   233 A---PRLPRRETSSSAYSADRYGSST---LDARYRGNRPLLSAATPTAAVTSVYKS----RNSRT 287

  Fly   421 QQTALAKKIAP 431
            :::..|.|.||
Yeast   288 RESQPAPKEAP 298

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	156..237	CDD:409828	11/40 (28%)
		RRM_SF	261..332	CDD:473069	23/83 (28%)
SNP1	NP_012203.1	U1snRNP70_N	6..97	CDD:432406	12/57 (21%)
		RRM_SNP1_like	89..201	CDD:410194	29/111 (26%)