Protein Alignment CG12288 and PABN1

DIOPT Version :10

• Sequence 1: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Sequence 2: NP_001190511.1
• Gene: PABN1 / 835186
• AraportID: AT5G51120
• Length: 265
• Species: Arabidopsis thaliana
• Alignment Length: 266
• Identity: 66/266 - (24%)
• Similarity: 117/266 - (43%)
• Gaps: 47/266 - (17%)

  Fly    82 KQQNKLAPKEIKTEPEAQVKVESKATKKEKVEKEPTTAPNEKPKGKVSKKAKANANNKD-EEGVK 145
            :|::::...||..|.|.::..|.   .:|...:|...|.:|        :.:..::::| |:..|
plant     6 EQEHEVYGGEIPEEEEGEMDTEE---YEEHGGEEGAAAGDE--------ELEPGSSSRDLEDMKK 59

  Fly   146 RIRNPAEEASTVFVGNLPINTKRVQLVKLFQPYGLVQSIRLRTAGGKQLFKHKQRKVAGSLNAYV 210
            ||:...|||..:          |....|..:..|..|.::|.......|:.:.....:.|:|
plant    60 RIKEIEEEAGAL----------REMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMN--- 111

  Fly   211 VLEKPEIAQQALALNGSEFK-ENHLRVTPASMAEKFGQAKDKQPSDKDAKRTIFVGSLKYSATEE 274
                       |:.|..||: |..:..:..|.|||          ::...|:|:||::.|:.|.|
plant   112 -----------LSRNLLEFEYEKEIINSGVSAAEK----------EEVDSRSIYVGNVDYACTPE 155

  Fly   275 QLREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALELNQTLLDDRPINVERYQVKKL 339
            ::::.|.|||.::.:..|.|.....||.|||.|.:.:||..:|.||::.|..|.|.|...:....
plant   156 EVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVP 220

  Fly   340 GAKQVR 345
            |.:|.|
plant   221 GMRQFR 226

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	156..237	CDD:409828	13/81 (16%)
		RRM_SF	261..332	CDD:473069	26/70 (37%)
PABN1	NP_001190511.1	SF-CC1	<56..>213	CDD:273721	50/190 (26%)
		RRM_II_PABPs	142..213	CDD:409747	26/70 (37%)