DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12288 and ATRZ-1A

DIOPT Version :10

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_189273.1 Gene:ATRZ-1A / 822246 AraportID:AT3G26420 Length:245 Species:Arabidopsis thaliana


Alignment Length:143 Identity:33/143 - (23%)
Similarity:58/143 - (40%) Gaps:26/143 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   256 KDAKRTIFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKG-CKGVAYVCFQKPDAVGLAL-E 318
            :|.:...|:|.|.::.::..||:.|...|.:...:.:.|...| .:|..::.|.:..|:..|: .
plant     3 EDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67

  Fly   319 LNQTLLDDRPINVERYQVKKLGAKQVRDAAAASAASKTSSKTKAKNQNSAGAKKRLDKKK----- 378
            :|...||.|.|.|::.|..:.||.  ||                 |....|..:..|:.:     
plant    68 MNGMDLDGRTITVDKAQPHQGGAG--RD-----------------NDGDRGRDRGYDRDRSRPSG 113

  Fly   379 GKENGSLKKEGAP 391
            |:..|...|.|.|
plant   114 GRGGGDCFKCGKP 126

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 156..237 CDD:409828
RRM_SF 261..332 CDD:473069 18/72 (25%)
ATRZ-1ANP_189273.1 RRM2_NsCP33_like 8..83 CDD:410187 19/74 (26%)
ZnF_C2HC 120..135 CDD:197667 3/7 (43%)
U2AF_lg 136..>242 CDD:273727
PRK04537 <208..240 CDD:235307
Blue background indicates that the domain is not in the aligned region.

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