DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12288 and Rbm19

DIOPT Version :9

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_083038.1 Gene:Rbm19 / 74111 MGIID:1921361 Length:952 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 155..237 CDD:240840
RRM_SF 261..332 CDD:302621
Rbm19NP_083038.1 RRM <2..183 CDD:223796
RRM1_RBM19 2..77 CDD:241008
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 85..126
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..267
RRM2_RMB19 293..364 CDD:240946
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 367..395
RRM3_RBM19 398..476 CDD:241011
ELAV_HUD_SF 402..798 CDD:273741
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 481..504
RRM4_RBM19 584..655 CDD:241013
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 664..719
RRM5_RBM19_like 722..801 CDD:240764
RRM6_RBM19 824..902 CDD:241015
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.