DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12288 and sart3

DIOPT Version :9

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_001025289.1 Gene:sart3 / 558581 ZFINID:ZDB-GENE-040724-10 Length:951 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 155..237 CDD:240840
RRM_SF 261..332 CDD:302621
sart3NP_001025289.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..58
RNA14 62..>496 CDD:227438
HAT 1. /evidence=ECO:0000255 88..120
HAT 2. /evidence=ECO:0000255 126..157
HAT 3. /evidence=ECO:0000255 163..199
HAT 4. /evidence=ECO:0000255 222..255
HAT 304..336 CDD:214642
HAT 5. /evidence=ECO:0000255 304..336
HAT 6. /evidence=ECO:0000255 339..371
HAT 7. /evidence=ECO:0000255 374..410
HAT 8. /evidence=ECO:0000255 467..500
Necessary and sufficient for U6 snRNA binding. /evidence=ECO:0000250|UniProtKB:Q15020 517..941
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 567..686
RRM1_SART3 689..762 CDD:240837
RRM <774..919 CDD:223796
RRM2_SART3 783..863 CDD:240838
LSM_int_assoc 861..920 CDD:293211
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 905..938
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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