DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12288 and SC35

DIOPT Version :10

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster


Alignment Length:194 Identity:42/194 - (21%)
Similarity:79/194 - (40%) Gaps:44/194 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   246 GQAKDKQPSDKDAKRTIFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDG-DKGCKGVAYVCF-Q 308
            |....:.|...|...::.|.:|.|..|.|.||.:|..|||:..|...:|. .:..:|.|:|.| .
  Fly     9 GLGAARPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYD 73

  Fly   309 KPDAVGLALELNQTLLDDRPINVE--RYQVKKLGAKQVRDAAAASAASKTSSKTKAKNQNSAGAK 371
            |.||......::..:||.|.:.|:  ||                   .:.||.|::.:       
  Fly    74 KRDAEDALEAMDGRMLDGRELRVQMARY-------------------GRPSSPTRSSS------- 112

  Fly   372 KRLDKKKGKENGSLKKEGAPTGQKKKSEYRGVKVDGIKKAKKPKKKSNDQQTALAKKIAPKQKS 435
                   |:..|.   .|..:|.:::|..|...   .::::.|:::|..:..:.... :|:::|
  Fly   113 -------GRRGGG---GGGGSGGRRRSRSRSPM---RRRSRSPRRRSYSRSRSPGSH-SPERRS 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 156..237 CDD:409828
RRM_SF 261..332 CDD:473069 23/72 (32%)
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 23/71 (32%)
Blue background indicates that the domain is not in the aligned region.

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