Protein Alignment CG12288 and pabpc1l

DIOPT Version :9

• Sequence 1: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Sequence 2: NP_001005062.1
• Gene: pabpc1l / 448615
• XenbaseID: XB-GENE-5742459
• Length: 629
• Species: Xenopus tropicalis
• Alignment Length: 337
• Identity: 69/337 - (20%)
• Similarity: 128/337 - (37%)
• Gaps: 105/337 - (31%)

  Fly   155 STVFVGNLPINTKRVQLVKLFQPYGLVQSIRL-------RTAGGKQLFKHKQRKVAGSLNAYVVL 212
            ::::||:|..:.....|.:.|.|.|.:.|||:       |:.|                .||:..
 Frog    11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLG----------------YAYINF 59

  Fly   213 EKPEIAQQAL-ALNGSEFKENHLRVTPASMAEKFGQAKDKQPS-DKDAKRTIFVGSLKYSATEEQ 275
            ::|..|::|| .:|....|...:|:          ....:.|. .|.....:|:.:|..|...:.
 Frog    60 QQPADAERALDTMNFEVIKGRPIRI----------MWSQRDPGLRKSGVGNVFIKNLDESIDNKA 114

  Fly   276 LREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALE-LNQTLLDDRPINVERYQ---- 335
            |.:.||:.|.|...:.:.| :.|.:|..:|.|:..:|...|:: :|..||:||.:.|..::
 Frog   115 LYDTFSAFGNILSCKVVCD-EHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRE 178

  Fly   336 ----------------VKKLGA----KQVRDAAAA----------------------------SA 352
                            :|..|.    |::|:..:|                            ..
 Frog   179 RELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEE 243

  Fly   353 ASKTSSKTKAKNQNS-----AGAKKRLDKKKGKENGSLKKEGAPTGQKKKSEYRGVKV------D 406
            |.|..|:...|..|.     ..|:||::::     |.||::.....|::.:.|:||.:      |
 Frog   244 AQKAVSEMNGKEVNGRMIYVGRAQKRIERQ-----GELKRKFEQIKQERINRYQGVNLYVKNLDD 303

  Fly   407 GIKKAKKPKKKS 418
            ||...:..|:.|
 Frog   304 GIDDDRLRKEFS 315

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	155..237	CDD:240840	21/89 (24%)
		RRM_SF	261..332	CDD:302621	20/71 (28%)
pabpc1l	NP_001005062.1	PABP-1234	11..612	CDD:130689	69/337 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910