DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12288 and dazap1

DIOPT Version :9

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:XP_012815264.1 Gene:dazap1 / 448406 XenbaseID:XB-GENE-856469 Length:411 Species:Xenopus tropicalis


Alignment Length:265 Identity:53/265 - (20%)
Similarity:102/265 - (38%) Gaps:51/265 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 EEASTVFVGNLPINTKRVQLVKLFQPYG------LVQSIRLRTAGGKQLFKHKQRKVAGSLNAYV 210
            :|...:|||.|..:|.:..|...|..||      :::......:.|....|.|.....|::    
 Frog     7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV---- 67

  Fly   211 VLEKPEIAQQALALNGSEFKENHLRVTPASMAEKFGQAKD----KQPSDKDAK-RTIFVGSLKYS 270
                  :|.:...|:|......  ..||..|..:..:.::    |.|..:::: ..||||.:.::
 Frog    68 ------LASRPHTLDGRNIDPK--PCTPRGMQPERTRPREGWQQKGPRTENSRSNKIFVGGIPHN 124

  Fly   271 ATEEQLREIFSSCGEIDYIRCLQDGDK-GCKGVAYVCFQKPDAVGLALELNQTLLDDRPINVERY 334
            ..|.:|||.|...|.:..:..:.|.:| ..:|..::.|:...:|            |:.:|:..:
 Frog   125 CGETELREYFKRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV------------DQAVNMHFH 177

  Fly   335 QVKKLGAK-QVRDAAAASAASKTSSKTKAKNQNSAGAKKRLDKKKG---------KENGSLKKEG 389
            .:  :|.| :|:.|....:.|:|..   ....|..|.:.......|         :::.|.:...
 Frog   178 DI--MGKKVEVKRAEPRDSKSQTPG---PPGSNQWGGRAMQSTANGWTGQPPPTWQQSYSPQGMW 237

  Fly   390 APTGQ 394
            .||||
 Frog   238 MPTGQ 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 155..237 CDD:240840 16/87 (18%)
RRM_SF 261..332 CDD:302621 17/71 (24%)
dazap1XP_012815264.1 RRM1_DAZAP1 11..92 CDD:241018 19/92 (21%)
RRM2_DAZAP1 112..191 CDD:240773 21/92 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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