DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12288 and Rox8

DIOPT Version :10

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster


Alignment Length:191 Identity:52/191 - (27%)
Similarity:81/191 - (42%) Gaps:24/191 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 EASTVFVGNLPINTKRVQLVKLFQPYGLVQSIRLRTAGGKQLFKHKQRKVAGSLNAYVVLEKPEI 217
            :..|::||||..:.....|:.||...|.|:|.::....|...:            |::.....:.
  Fly     5 QPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPY------------AFIEYSNYQA 57

  Fly   218 AQQAL-ALNGSEFKENHLRVTPASMAEKFGQAKDKQP-SDKDAKRTIFVGSLKYSATEEQLREIF 280
            |..|| |:|...|.|..::|..|:       :...|| :|..:...||||.|......|.|||.|
  Fly    58 ATTALTAMNKRLFLEKEIKVNWAT-------SPGNQPKTDISSHHHIFVGDLSPEIETETLREAF 115

  Fly   281 SSCGEIDYIRCLQD-GDKGCKGVAYVCF-QKPDAVGLALELNQTLLDDRPINVERYQVKKL 339
            :..|||...|.::| .....||.|:|.| :|.:|......:|...:..|.|.. .:..:||
  Fly   116 APFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRT-NWSTRKL 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 156..237 CDD:409828 20/81 (25%)
RRM_SF 261..332 CDD:473069 25/72 (35%)
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 20/82 (24%)
RRM2_TIA1_like 96..170 CDD:409789 25/74 (34%)
RRM_SF 221..292 CDD:473069
Blue background indicates that the domain is not in the aligned region.

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