Protein Alignment CG12288 and sqd

DIOPT Version :10

• Sequence 1: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Sequence 2: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Alignment Length: 213
• Identity: 51/213 - (23%)
• Similarity: 86/213 - (40%)
• Gaps: 24/213 - (11%)

  Fly   224 LNGSEFKENHLRVTPASMAEKFGQA------KDKQPS---DKDAKRTIFVGSLKYSATEEQLREI 279
            :||.:|.::.....|.|.....|.|      .|.|.:   .:|..|.:|||.|.:..||::||:.
  Fly    11 INGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDH 75

  Fly   280 FSSCGEIDYIRCLQDGDKG-CKGVAYVCFQKPDAVGLALELNQTLLDDRPINVERYQVKKLGAKQ 343
            |...|||:.|....|...| .:|.|::.|...:|:.     ..:..|:..||.::...||..|:.
  Fly    76 FGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAID-----KVSAADEHIINSKKVDPKKAKARH 135

  Fly   344 VRDAAAASAASKTSSKTK---AKNQNSAGAKKRLDKKKGKENG----SLKKEGAPTGQKK--KSE 399
            .:..........:..:.|   .:..|....:...||:|.:..|    :...|...|...|  |.:
  Fly   136 GKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQK 200

  Fly   400 YRGVKVDGIKKAKKPKKK 417
            ..|.:||..:...||:.:
  Fly   201 IAGKEVDVKRATPKPENQ 218

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	156..237	CDD:409828	3/12 (25%)
		RRM_SF	261..332	CDD:473069	22/71 (31%)
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	22/75 (29%)
		RRM2_hnRNPD_like	137..211	CDD:240775	13/73 (18%)