DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12288 and tia1

DIOPT Version :10

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:XP_012814227.2 Gene:tia1 / 394890 XenbaseID:XB-GENE-1002876 Length:389 Species:Xenopus tropicalis


Alignment Length:241 Identity:58/241 - (24%)
Similarity:94/241 - (39%) Gaps:67/241 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 TVFVGNLPINTKRVQLVKLFQPYGLVQSIR--LRTAGGK-----QLFKHKQRKVAGSLNAYVVLE 213
            |::||||..:.....::::|...|..:|.:  :.|||..     :.|:|  |..|.||       
 Frog     8 TLYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMDTAGNDPYCFVEFFEH--RHAAASL------- 63

  Fly   214 KPEIAQQALALNGSEFKENHLRV----TPASMAEKFGQAKDKQPSD-KDAKRT-----IFVGSLK 268
                    .|:||.:.....::|    ||:|      |.||...|. ....|:     :|||.|.
 Frog    64 --------AAMNGRKIMGKEVKVNWATTPSS------QKKDANSSSVVSTLRSQDHFHVFVGDLS 114

  Fly   269 YSATEEQLREIFSSCGEIDYIRCLQDGDKG-CKGVAYVC-FQKPDAVGLALELNQTLLDDRPINV 331
            ...|.:.::..|:..|.|...|.::|...| .||..:|. |.|.||.....::..          
 Frog   115 PEITTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGG---------- 169

  Fly   332 ERYQVKKLGAKQVRD--AAAASAASKTSSKTKAK--------NQNS 367
                 :.||.:|:|.  |.....|.|::.::..|        ||:|
 Frog   170 -----QWLGGRQIRTNWATRKPPAPKSTYESNTKQLTYEEVVNQSS 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 156..237 CDD:409828 21/91 (23%)
RRM_SF 261..332 CDD:473069 18/77 (23%)
tia1XP_012814227.2 RRM1_TIA1 8..81 CDD:410027 21/89 (24%)
RRM2_TIA1 104..181 CDD:410030 22/91 (24%)
RRM3_TIAR 214..286 CDD:241064
Blue background indicates that the domain is not in the aligned region.

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