Protein Alignment CG12288 and pabpc1b

DIOPT Version :10

• Sequence 1: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Sequence 2: NP_957176.1
• Gene: pabpc1b / 393856
• ZFINID: ZDB-GENE-050308-1
• Length: 634
• Species: Danio rerio
• Alignment Length: 337
• Identity: 82/337 - (24%)
• Similarity: 135/337 - (40%)
• Gaps: 95/337 - (28%)

  Fly   150 PAEEASTVFVGNLPINTKRVQLVKLFQPYGLVQSIRL-------RTAGGKQLFKHKQRKVAGSLN 207
            |:...::::||:|..:.....|.:.|.|.|.:.|||:       |:.|                .
Zfish     6 PSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLG----------------Y 54

  Fly   208 AYVVLEKPEIAQQAL-ALNGSEFKENHLRVTPASMAEKFGQAKDKQPS-DKDAKRTIFVGSLKYS 270
            |||..::|..|::|| .:|....|...:|:          ....:.|| .|.....||:.:|..|
Zfish    55 AYVNFQQPADAERALDTMNFDVIKGRPVRI----------MWSQRDPSLRKSGVGNIFIKNLDKS 109

  Fly   271 ATEEQLREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALE-LNQTLLDDRPINVERY 334
            ...:.|.:.||:.|.|...:.:.| :.|.||..:|.|:..:|...|:| :|..||:||.:.|.|:
Zfish   110 IDNKALYDTFSAFGNILSCKVVCD-ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173

  Fly   335 QVKK-----LGAK-------------------QVRD-----AAAASAASKTSSKTKAKN------ 364
            :.:|     |||:                   :::|     ..|.|....|....|::.
Zfish   174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSF 238

  Fly   365 QNSAGAKKRLDKKKGKE-NGSL-------KKEGAPTGQKKKSE---------YRGVKV------D 406
            :....|::.:|:..||| ||.|       ||....|..|:|.|         |:||.:      |
Zfish   239 ERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303

  Fly   407 GIKKAKKPKKKS 418
            ||...:..|:.|
Zfish   304 GIDDERLRKEFS 315

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	156..237	CDD:409828	22/88 (25%)
		RRM_SF	261..332	CDD:473069	23/71 (32%)
pabpc1b	NP_957176.1	PABP-1234	11..613	CDD:130689	81/332 (24%)