Protein Alignment CG12288 and rbm28

DIOPT Version :9

• Sequence 1: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Sequence 2: NP_956615.1
• Gene: rbm28 / 393291
• ZFINID: ZDB-GENE-040426-960
• Length: 864
• Species: Danio rerio
• Alignment Length: 562
• Identity: 107/562 - (19%)
• Similarity: 184/562 - (32%)
• Gaps: 220/562 - (39%)

  Fly    19 KEPGVVEDGKV-----TKKSKTKPKKKTVKVPKDEVKAAVQESPKKLSAKDLAKIEKKKAKK--- 75
            ||..:.:|.|:     .||...:.:||..|..||  ....:||.|....|:..||.....||
Zfish    62 KEVKLYDDQKIFVTVAKKKLDDRKRKKNAKTNKD--SGDTEESQKSGETKNTEKIPSPTKKKENS 124

  Fly    76 -----------QAQKLKKQQNK----------LAP------------KEIKTEPEAQVKVESKAT 107
                       :..:||:..:|          |.|            |.:....:|:..:..||.
Zfish   125 WLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARAAMNRKAI 189

  Fly   108 KKEKVEKEPTTAPNEKPKGKVSK---KAKANANNKDEEGVKRIRNPAEEASTVFVGNLPINTKRV 169
            :...||.:.||:..|....:.::   ||:...:.:..:|:::|:    ..|.:.:.||....:..
Zfish   190 RDRPVEVDWTTSNTESADPEDTEEPHKAEETTSTEKFKGIRKIK----LKSRLIIRNLSFKCEED 250

  Fly   170 QLVKLFQPYGLV--QSIRLRTAGGKQLFKHKQRKVAGSLNAYVVLEK-PEIAQQALALNGSEFKE 231
            .|.::|..:|.|  ..|.|:..|.|:.|            |:|:.:: ||..:...|:||.:.|:
Zfish   251 DLKQIFSEFGTVLEAKIPLKPDGKKRGF------------AFVLFKRMPEAGKALTAMNGKKIKD 303

  Fly   232 NHLRVTPASMAEKF---------GQAKDKQ----------------------------------- 252
            ..:.|..|...:|:         |..|::.
Zfish   304 RQVAVDWAIAKDKYLATQSASAAGNIKEENVTGKVEEADENKDAKKKSISKKSDSSEDEDDDDDD 368

  Fly   253 --------------------------------------------------------------PSD 255
                                                                          |||
Zfish   369 DDSSGSEMDDAENESQQSDDEDDDDDDDDDDDDDNNDDDDDDDDDDDDSEGKTPSKKKRNPLPSD 433

  Fly   256 KDAKRTIFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKG-CKGVAYVCFQKPDA----VGL 315
            .:..||||:.:|.:.:.||.|.|:....||:.|:|.:.:.|.| .||.|:..|:..:|    :..
Zfish   434 VNEGRTIFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDTGVSKGCAFAQFKSKEAAEKCIAA 498

  Fly   316 AL---ELNQTLLDDRPINV---------ERYQVKKL-------------------GAKQVRDAAA 349
            ||   |.:...||.|.:|:         .:::.||:                   |.|.....:.
Zfish   499 ALDEKEFSGIKLDGRRLNILMAINRDDAAKFKDKKVKTHTGSRNLYLAREGLIRAGTKAAEGISE 563

  Fly   350 ASAASKTS----SKTKAKNQNSAGAKKRL---------DKKK 378
            |..|.:|.    .:.:.|:.|...:|.||         ||.|
Zfish   564 ADIAKRTRFEELKRARLKDINVYVSKTRLCVHNLPKSVDKNK 605

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	155..237	CDD:240840	20/84 (24%)
		RRM_SF	261..332	CDD:302621	26/87 (30%)
rbm28	NP_956615.1	ELAV_HUD_SF	2..316	CDD:273741	59/271 (22%)
		RRM1_RBM28_like	5..77	CDD:240859	4/14 (29%)
		RRM2_RBM28_like	126..198	CDD:240860	11/71 (15%)
		RRM2_RBM28_like	237..312	CDD:240860	20/86 (23%)
		RRM3_RBM28_like	438..520	CDD:240861	27/81 (33%)
		RRM4_RBM28_like	590..683	CDD:240862	5/16 (31%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910