Protein Alignment CG12288 and Elavl1

DIOPT Version :9

• Sequence 1: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Sequence 2: NP_001102318.1
• Gene: Elavl1 / 363854
• RGDID: 1308649
• Length: 326
• Species: Rattus norvegicus
• Alignment Length: 248
• Identity: 57/248 - (22%)
• Similarity: 96/248 - (38%)
• Gaps: 69/248 - (27%)

  Fly   155 STVFVGNLPINTKRVQLVKLFQPYGLVQSIRLRTAGGKQLFKHKQRKVAG-SLN-AYVVLEKPEI 217
            :.:.|..||.|..:.:|..||...|.|:|.:|           .:.|||| ||. .:|.....:.
  Rat    20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKL-----------IRDKVAGHSLGYGFVNYVTAKD 73

  Fly   218 AQQALA-LNGSEFKENHLRVTPASMAEKFGQAKDKQPSD---KDAKRTIFVGSLKYSATEEQLRE 278
            |::|:: |||...:...::|:.|            :||.   |||  .:::..|..:.|::.:.:
  Rat    74 AERAISTLNGLRLQSKTIKVSYA------------RPSSEVIKDA--NLYISGLPRTMTQKDVED 124

  Fly   279 IFSSCGEIDYIRCLQDGDKG-CKGVAYVCFQK---------------------PDAVGLALELNQ 321
            :||..|.|...|.|.|...| .:|||::.|.|                     |..|..|...||
  Rat   125 MFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQ 189

  Fly   322 ----TLLDD----------RPIN--VERYQVKKLGAKQVRDAAAASAASKTSS 358
                .||..          .|::  .:|::...:|...:...:..:.....||
  Rat   190 NKNMALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGISGVNVPGNASS 242

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	155..237	CDD:240840	23/84 (27%)
		RRM_SF	261..332	CDD:302621	23/108 (21%)
Elavl1	NP_001102318.1	ELAV_HUD_SF	19..326	CDD:273741	57/248 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	1	1.010	-	-		QHG55893
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.010