DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12288 and CG13185

DIOPT Version :9

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_001097279.2 Gene:CG13185 / 36268 FlyBaseID:FBgn0033661 Length:5526 Species:Drosophila melanogaster


Alignment Length:413 Identity:76/413 - (18%)
Similarity:133/413 - (32%) Gaps:145/413 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 ESEKA--ELKPIKKEPGVVEDGKVTKKSKTKPKKKTVKVPKDEVKAAVQESPKKLSAKDLAKIEK 70
            |.::|  |.||.:::.|..|:.                .|:||...|..:...:|..:|.:|.|.
  Fly  4877 EEDEAGTEAKPAEEDHGEGEEA----------------TPEDEKDEAETQKRGELEDEDDSKPED 4925

  Fly    71 KKAKKQAQKLKKQQNKLAPKEIKTEPEAQVKVESKATKKEKVEKEPTTAPN---------EKPKG 126
            .....:.:|.:|::.|         ||...:.:.||:|:|.|:..|.|..:         :.|..
  Fly  4926 SPEDSKEEKEEKREEK---------PEEHSQSKDKASKEENVQSMPETDQSSSADQVQQPQDPDI 4981

  Fly   127 KVSKKAKANANNKDEEGVKRIRNPAEEASTVFVGNL-------------PINTKRVQLVKLFQPY 178
            |..:|.......::::||.:..|.|::.....|...             ....||.|        
  Fly  4982 KQDQKLDEQETGEEKDGVGQAENDADDGGHQGVAETQETVSQEDRKNERQTQEKRKQ-------- 5038

  Fly   179 GLVQSIRLRTAGGKQLFKHKQRKVAGSL-----NAYVVLEKPEIAQQALALNGSEFKENHLRVTP 238
              .::...|:.|..:..|.||.|....|     :.....||||...|                  
  Fly  5039 --GRTNEERSLGEAEQNKLKQLKTIDQLKDSKESDDAEQEKPEPMDQ------------------ 5083

  Fly   239 ASMAEKFGQAKDKQPSDKDAKRTIFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKGCKGVA 303
             :.||::...|:.:.|||         :...:|||||.::|...                     
  Fly  5084 -TEAEEYQHVKEPKNSDK---------TTLDNATEEQSKKIQHQ--------------------- 5117

  Fly   304 YVCFQKPDAVGLALELNQTLLDDRPINVERYQVKKLGAKQVRDAAAAS----------AASKTSS 358
                                 :|.|.|.|..:.:.:......:..|..          .|.||..
  Fly  5118 ---------------------EDEPPNEEEIEAENVDELMEAEEPAVDPEDDAELEQLGAEKTEQ 5161

  Fly   359 KTKAKNQNSAGAKKRLDKKKGKE 381
            |:. |...:..:|::|:..:|.|
  Fly  5162 KSD-KPSKTEKSKEQLETPEGME 5183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 155..237 CDD:240840 16/99 (16%)
RRM_SF 261..332 CDD:302621 9/70 (13%)
CG13185NP_001097279.2 MDN1 298..5521 CDD:227596 76/413 (18%)
P-loop_NTPase 315..505 CDD:304359
P-loop_NTPase <887..972 CDD:304359
P-loop_NTPase 1147..1283 CDD:304359
P-loop_NTPase 1454..1603 CDD:304359
P-loop_NTPase 1795..1946 CDD:304359
P-loop_NTPase <2335..>2378 CDD:304359
Prothymosin 4843..4920 CDD:281265 12/58 (21%)
PHA03151 4856..5060 CDD:177546 43/217 (20%)
MttA_Hcf106 <5046..5166 CDD:294511 32/190 (17%)
vWA_midasin 5261..5526 CDD:238737
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.