Protein Alignment CG12288 and Rbm39

DIOPT Version :9

• Sequence 1: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Sequence 2: XP_006235393.1
• Gene: Rbm39 / 362251
• RGDID: 1310071
• Length: 530
• Species: Rattus norvegicus
• Alignment Length: 377
• Identity: 86/377 - (22%)
• Similarity: 148/377 - (39%)
• Gaps: 75/377 - (19%)

  Fly     1 MKTPKAKESEKAELKPIKKEPGVVEDGKVTKKSKTKPKKKTVKVPKDEVKAAVQESPKKLSAKDL 65
            ::.|..|:..|     :....|..|..|..||||::.:....|..|.:
  Rat    11 LEAPYKKDENK-----LNSANGHEERSKKRKKSKSRSRSHERKRSKSK----------------- 53

  Fly    66 AKIEKKKAKKQAQKLKKQQNKLAPKEIKTEPEAQVKVESKATKKEKVEKEPTTAP--NEKPKGKV 128
               |:|:::.:.:|..|.:.:   |..:::...:.:..|:..:.....:.|.:.|  |...:||:
  Rat    54 ---ERKRSRDRERKKSKSRER---KRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKI 112

  Fly   129 S-----KKAKANANNKD--EEGVKRIRNPAE-------EASTVFVGNLPINTKRVQLVKLFQPYG 179
            .     |.::..:.:|.  .:....:|.|.:       :|.|||...|....:...|.:.|...|
  Rat   113 GLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVG 177

  Fly   180 LVQSIRLRTAGGKQLFKHKQRKVAGSLNAYVVLEKPEIAQQALALNGSEFKENHLRVTPASMAEK 244
            .|:.:|:       :.....|:..|.  |||..........|:.|.|.......: :..||.|||
  Rat   178 KVRDVRM-------ISDRNSRRSKGI--AYVEFVDVSSVPLAIGLTGQRVLGVPI-IVQASQAEK 232

  Fly   245 ---FGQAKDKQPSDKDAKRTIFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKG-CKGVAYV 305
               ...|.:.|.......| ::||||.::.||:.||.||...|.|:.|:.:.|.:.| .||..::
  Rat   233 NRAAAMANNLQKGSAGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296

  Fly   306 CFQKPDAVGLALE-LNQTLLDDRPINV----ERYQVKKLGAKQVRDAAAASA 352
            .|...:....||| ||...|..||:.|    ||           .||::||:
  Rat   297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTER-----------TDASSASS 337

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	155..237	CDD:240840	17/81 (21%)
		RRM_SF	261..332	CDD:302621	27/76 (36%)
Rbm39	XP_006235393.1	SF-CC1	46..518	CDD:273721	76/337 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910